Protein Info for mRNA_7862 in Rhodosporidium toruloides IFO0880

Name: 16230
Annotation: Hypothetical Protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 838 transmembrane" amino acids 206 to 226 (21 residues), see Phobius details amino acids 382 to 404 (23 residues), see Phobius details amino acids 429 to 450 (22 residues), see Phobius details amino acids 471 to 494 (24 residues), see Phobius details amino acids 501 to 520 (20 residues), see Phobius details amino acids 574 to 595 (22 residues), see Phobius details amino acids 601 to 621 (21 residues), see Phobius details amino acids 642 to 660 (19 residues), see Phobius details amino acids 743 to 761 (19 residues), see Phobius details amino acids 813 to 826 (14 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (838 amino acids)

>mRNA_7862 Hypothetical Protein (Rhodosporidium toruloides IFO0880)
MSASERTPLLSSQAGGSGASSTSRFPSTTSAPTTRPRPTLSAPVPNSAAGLILTEDDIAI
EGMVLALLAELSDRGYVVPPGLPTLPPDMPREEADAEIAFLRSVFGVPRHRRVLDKYLPD
LSRNAGGNGAATGGANGFSTNGTETPVLPGSIMSTNRPAVTPTGRRGGTLAHTSSSASSL
SNASTSSSHTLPARPSPLSSQVLDTTVITSPSALFLAALLSLLISLQAEYRGSVEETDPG
VDGELRMFKARRELGERMYAVVEGLLDSYLVTGDARHHHEGEDDDEDEDALVTLLFRDFP
LHYDSMDRATCSLDLLLTLSSAPLVEAEDLVSHPVVLASTEYVWRNGLLPAPKRGVRSLT
WKESFVRLDRFSIPRILHNQTYILSTVHAFITVYILMFSAYSHFYAFNPLAPDIIRVPEG
SGGRPTKGWGIIPSLVWWLWVAGVFGWAGEVGRAWLNRGPQSSLPLSPSTLLPLLYHALV
FVSLLFRILAFYIATPRHRPTFMLATSLSLLAWSIPFLAASRVLPQNLPSFGTPTHQEWS
KIRDGRKRRDVGYRPPPKRVPESHRALRSLESHLGGLVQFSTYFAVFGLLTLWSLSGDID
YPSVLLNLLHFPLVPLQSWATFRESAQVNATAANASRTPLEARTTLAFTLVLGAVLAYFS
GGRPSVSPKPAHASAHLSSPRRELDDLDGWDRYGREVAFRSRRERLAVNRYFTYVPLGSG
RGGQRRLESLASAFSTPPLPSPLNLAIPPLLFVCAVLKRVVRFRVEQRRRWAAVRGRFVE
DGDARGEYETLLSPGQEAERVARRLQEVVRLWVWRIGISPLGGWAVAAKGIRRLRGKE