Protein Info for mRNA_7887 in Rhodosporidium toruloides IFO0880

Name: 16255
Annotation: HMMPfam-Uncharacterized conserved protein (DUF2183)-PF09949

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1021 PF09949: DUF2183" amino acids 670 to 769 (100 residues), 104.6 bits, see alignment E=1.5e-34

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1021 amino acids)

>mRNA_7887 HMMPfam-Uncharacterized conserved protein (DUF2183)-PF09949 (Rhodosporidium toruloides IFO0880)
MLRARALAKVNKFASQTSEFVSPRLESARESAAGKLANLKEAYYAQQQQANGASAGGHTE
SNWATSERVVARPKKALRTRQVQGEFAEPSLASGGMRSRGMTPPGSSTESRTGKWAAGIG
SYFSTNAAPAATASSSGTGTPAKGKGKALLTDDIDEERIVCFPGWATLQPAPHDVAEPAL
VLDILVHGYAYRQRPLSQASRSQRIFYALAKSFAALPKIPPNLAPTVAPDVALGSAASID
SSLRDAAIDDPSVMDKLLEVGGRSDDRHAKDELAGAAVEAVEGKELSDEPSEMSAEEKMR
SPTAASFAQAAAQPIPPHHPPHPAHASTAPPPSSRSSEDEKILPTPAKLNRRPHVRIEIP
PSKLGGAGKAISALRSPSVPSSPSSTTHPPPKSPGLRSATFGFGSKKDRDSKHSRASSAA
SSVASSRASSRASSRANSPTRASSSAPPPETWPQPFTLPSSPADLPHLHTNLHTRLLPFF
GQKLTARKVRISIYPALKGGQLWDGALATKVVATVAPGGGFRTRMSVGGKELKRWLEVVG
SAPHPGGEGGMDQLKVRVVAELLEPDGGVSTADSWSDAGAAASVGGGGGYAQAKPTAEDE
VELGVAIQGERGAGSGVRVVSDVDDTIKWTEVLKGTKTIFRNVFVRELYEIRVPGMASWY
QQMQTLGCHFHYVSNSPWELWPVVRSFLVLAGFPGGSCTLKEYGGASSALAKLWEEPGQR
KRANVEAILKEFPESQFLLIGDSGEQDLELYRSLASQYPQNVLAIFIRDVTTPFHPQRTE
PTVSYATYKSARRADSLATPVADPTAATSETPSTPLAPPKLRWRHSQSASDLASLVDEEK
ARFSAEHGADDRPFSEMPDLPGQWDGSHERPVPVRRRSGSELTLRTSEREPSTPTRPKLG
DRTRSSPFNVFRSPGSSRASSPTRGSAPSSAPSTPRSETPDPLALTDDPFSDALSPNNPL
RPSPPPTRPEQGTPAAVEAFYKRVADAERLLPKEVKLRLFRHGTECTEEAIKIIKEAKKR
R