Protein Info for mRNA_7895 in Rhodosporidium toruloides IFO0880

Name: 16263
Annotation: KOG0027 Calmodulin and related proteins (EF-Hand superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 143 PF13405: EF-hand_6" amino acids 80 to 108 (29 residues), 24.2 bits, see alignment 3.2e-09

Best Hits

Swiss-Prot: 57% identical to MLR4_SCHPO: Myosin regulatory light chain cdc4 (cdc4) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: None (inferred from 70% identity to scm:SCHCODRAFT_86330)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (143 amino acids)

>mRNA_7895 KOG0027 Calmodulin and related proteins (EF-Hand superfamily) (Rhodosporidium toruloides IFO0880)
MSAPDAEAKEAFALFDKRGAGTIPASSLGDILRALGQNPTQKEVADLAQSVGGGEIDYST
FVNILNRPGGFDPAGTADEFIRGFQVFDKDNNGYIGQGELRYVLTSLGEKLSDWEVDELL
KGVKVTPEGNINYVSFVHQILGQ