Protein Info for mRNA_7921 in Rhodosporidium toruloides IFO0880

Name: 16289
Annotation: KOG3022 Predicted ATPase, nucleotide-binding

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 355 transmembrane" amino acids 153 to 173 (21 residues), see Phobius details PF10609: ParA" amino acids 89 to 342 (254 residues), 309.1 bits, see alignment E=3.3e-96 PF02374: ArsA_ATPase" amino acids 91 to 119 (29 residues), 23.7 bits, see alignment (E = 3.8e-09) PF01656: CbiA" amino acids 93 to 321 (229 residues), 36 bits, see alignment E=1e-12

Best Hits

Swiss-Prot: 66% identical to NBP35_CRYNJ: Cytosolic Fe-S cluster assembly factor NBP35 (NBP35) from Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565)

KEGG orthology group: None (inferred from 66% identity to cnb:CNBE3090)

Predicted SEED Role

"Cytosolic Fe-S cluster assembling factor NBP35"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (355 amino acids)

>mRNA_7921 KOG3022 Predicted ATPase, nucleotide-binding (Rhodosporidium toruloides IFO0880)
MAVAAIQLPPACPPPPAPGGTDTAKAQAVATLLPSNIPENAPEHCPGTESTQAGLAPGCA
GCPNQEACSTAPKGPDPDLAIVRERLKDVKHKVLVLSGKGGVGKSTVSAMLGWALSEGEE
GENDTGLMDVDICGPSLPLLFGMQGQRMHSTSAGILPLSITSSLSLVSIGFLLPSSDSAV
IWRGPKKNGLIKQFLKDVDWGHLENLVIDTPPGTSDEHLSVVQYLAAAGGVDGAVIVTTP
QEVALQDVRKELDFCRKVDVPVLGVVENMSGFVCPSCGGESDIFVPSTGGADELAREWGI
EVLGQVPLDPRIGKSGDYGQSFLEEYPESPASVAYRRIVGRIKEKLHAKSATLLA