Protein Info for mRNA_7943 in Rhodosporidium toruloides IFO0880

Name: 16311
Annotation: HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1071 transmembrane" amino acids 285 to 304 (20 residues), see Phobius details amino acids 311 to 331 (21 residues), see Phobius details PF00172: Zn_clus" amino acids 17 to 49 (33 residues), 28.1 bits, see alignment (E = 9.3e-11)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1071 amino acids)

>mRNA_7943 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 (Rhodosporidium toruloides IFO0880)
MSDGLAKTAKSSRSRAACDSCKSTKQRCDGPSVIPCRRCQLYGLQCLYSTVPAPSRKTAK
VLAASAPSSSSSIASVLPVAQANVGLDAGTNTLLHDMAARLRSIESTLSGLQLSTVIAQA
HGHSSSSAADSLDPKSSIAGADTPDDDSPASSHSGPSRKPSLAASQARPNGSTVPSAVPE
NTGETALQAINDAVELINSFAGQANAVPQAGGASGTDGAGVGATIGRIMALEGWTRPDAV
ERGVMTADECTKSLEIFFNRIAPWIPVFPSPPTAEWSLDALRARSPVLFHVMLLTTSYFL
LPSPGDKSKKVYLQLLTIVNELVAPIVLGTMKEDLTPDLVRALLILLVYKPVEYSHLLHT
HATTPTAAERAAKNNAPSSAVIWMLETFVVRRIGLDSAPADFARAYQAAGGEASKIPSSV
IDNLRLFMWFLVTDVHGALTTGRATSGFSASAAARTTRAFASLQIQPSDTRLCAFLEFYG
LVGKVLGRPWVRGEGLWRDEWEKEMEEWNKGVEAWEDHWREGLREAFKKGDRHAWNAATV
HVQLVKATVNASVFYRWNRLRRAAATGSGGPSPPITPDSPFPPSPSSAPPTLSPTEWRFL
GVSIAALERMMFSLSEESRVLKPGQVEWAGERRVQWPPVDPATGLRKPLTPDQEMIAAMK
TAIDPVTCIGLAYPLILLAKMCNAGLSRCELTTTDKPADPSDPTASPAATSPSAYVPTPA
ASYLTGRPILVGRKLCVLLGLGASFLEAIAPTPTHPSAIHAQTLRTIFRAGTWGQDGTRG
TTAAQRELFNAVKTGQAQPEAMGVMDSAGVQIAQVRDAGKILAAVLAQISPANSPPPATL
PDPPKQASLSPPLAMAMPQQQQPEQQMPPQDSFFAFRTNGPFSTTAPTSPPLFGMQQHPQ
PQGPSMNAPPIYPPSYTTSASDFGSLFSSVSPSSGSNISPAISSGAPLQSTSPPAFSFSN
NSGSFSFSSSVSPPPLGQPATAFSSPSTNSGFTSLGSQPAGAGTSMAVDVDTDSLLARAG
EIDWSAIERQLGMKDGALSAGVGFGAGDFNVGGASLGLSGMGDGSTDWMNL