Protein Info for mRNA_7971 in Rhodosporidium toruloides IFO0880

Name: 16339
Annotation: HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 914 transmembrane" amino acids 154 to 175 (22 residues), see Phobius details amino acids 449 to 470 (22 residues), see Phobius details PF01753: zf-MYND" amino acids 9 to 49 (41 residues), 28.2 bits, see alignment (E = 8.1e-11)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (914 amino acids)

>mRNA_7971 HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232 (Rhodosporidium toruloides IFO0880)
MDSQTTGECLVCGTETKNRCSACAKAGIDLFFCSPEHQKMVWQGHKLFCGPNAFPFSFPL
LSETEASDIIASLEQPVARAEESCTRSANVMEELKAHLSWPDATKTDLIELITSSTDVPA
PSASPALDKLPALLVWSRYATLATHRTTDSFRQFLLQGMAGFYALLFGAGALPPVLPQDL
DVRSARLLHQMLCFMTLHAAYSPPCPFAGEALPPPSTSQDCKRCVTALMQYAGKTFGLEY
LQKLSVAFGGASSSFARPKMAHSLEPRRTSSHRFERRATAPACTSSSNLYTHPQASDTLP
VYEDITLEWNPGCVTIDSSTVDLYLSVEEDSGWLAVHEWTNVQYAQGKLDTQLKPGWWNA
STGAGQVSAQVRLPRRSLSSLKPPADLLGASVEHARARRTRLCHRLQRIASPHYPSVTQS
AASSNYTGPSVESVADPATKSSSPSGGKLGAAIAVPLLVVGLAVAGYVTWHKLRKRPEKK
RFSAVVDHRMSMISQGTWQPRPSMAGSRPGSFHPSHRPSGSQYTAANRQSYFADPNARHS
TYSFAGSGVGVPSPLGAGIRQPPPAEMRQTGSGERMSRVSFAAGEALGRPSFASQARPGS
VHTRSSLHQSQLRNSTFFSGATEVPLPPSPGHSPQLSRSAGPTFGSSPSIPRSPSSSTSL
AVTAPEGDYFSRSGTREELASIRSPSNSSSLGALAGFSKPVKPFGHAHKTSVASSLRNEL
SSMPAAAIVRDGRLAYSQPPSASGQSSPVSPFGEHTLSAGLPSPALSSPSLTDSSANLSP
ALAETDSSMPRAFHDSHRSSQILSPDEALASYARDATSPTPGQARGAAKGGLGGFLGGWR
RAGMMRSLTGGSIASRERAKSPFEDPEEVDEKEEGVHAGLELELGESVGYAEGFERSERE
KRDEIADEKSGHAL