Protein Info for mRNA_7975 in Rhodosporidium toruloides IFO0880

Name: 16343
Annotation: KOG0762 Mitochondrial carrier protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 379 transmembrane" amino acids 41 to 53 (13 residues), see Phobius details amino acids 112 to 132 (21 residues), see Phobius details amino acids 154 to 171 (18 residues), see Phobius details amino acids 357 to 378 (22 residues), see Phobius details PF00153: Mito_carr" amino acids 35 to 141 (107 residues), 71.8 bits, see alignment E=1.8e-24 amino acids 154 to 238 (85 residues), 38.7 bits, see alignment E=3.8e-14 amino acids 279 to 377 (99 residues), 67.3 bits, see alignment E=4.6e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (379 amino acids)

>mRNA_7975 KOG0762 Mitochondrial carrier protein (Rhodosporidium toruloides IFO0880)
MPPHLPSSLSHSMSSSPPGSPSSPSSLDAAEPAPISPALDFFAGTVAGIASLVTGHPFDT
VKVRLQTQPRTSSRSSTYTLAQTAASTKDGLYYRNAGHAFVRVVREEGVRGLYKGVTSPM
LGVALMNASVFTSYKYAMNLLSPGDGQKEPGLGEVAVAGAASGVFTSIITTPIDRLKILQ
QSVLPSSSSSAATPARQPSLLSLLRTLSLPSLYRGWSATILRDLGYGPYFLTYEYVVRGG
SFGLSWAEGEKRHLKRDLREEVESEVFGIGEGGEEGAASPGRVLLAGGLAGIVGWGCTFP
LDVVKTKIQSVPASSLLPSSTSTSSSPEKYSTILSTIRTSYHEAGWRVFIAGLGPTLVRS
VPVNMVTFAVFELVVAAFR