Protein Info for mRNA_7983 in Rhodosporidium toruloides IFO0880

Name: 16351
Annotation: K11495 CENPA histone H3-like centromeric protein A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 165 PF00125: Histone" amino acids 38 to 161 (124 residues), 135.6 bits, see alignment E=6.9e-44

Best Hits

Swiss-Prot: 59% identical to CENPA_NEUCR: Histone H3-like centromeric protein hH3v (hH3v) from Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)

KEGG orthology group: K11495, histone H3-like centromeric protein A (inferred from 59% identity to ncr:NCU00145)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (165 amino acids)

>mRNA_7983 K11495 CENPA histone H3-like centromeric protein A (Rhodosporidium toruloides IFO0880)
MAQTPRKQPAKKTVVAKKTVVQKKVAGKTLGGGAGKGPRKSTGGKTRHGQPAAQPAQRKP
RRFRPGTRALQEIRHYQKGTDLLLRRLPFARLVREIAMEFLADDEEGNAPGLRWQSSALL
ALQEATEAYLIHLFEDSNLCALHAKRVTIMQRDMQLVRRIRGDFM