Protein Info for mRNA_8005 in Rhodosporidium toruloides IFO0880

Name: 16373
Annotation: BLAST alpha- -mannosyltransferase alg11p [Moniliophthor...

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 399 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details amino acids 38 to 58 (21 residues), see Phobius details amino acids 106 to 124 (19 residues), see Phobius details amino acids 136 to 163 (28 residues), see Phobius details amino acids 183 to 202 (20 residues), see Phobius details amino acids 211 to 232 (22 residues), see Phobius details amino acids 297 to 315 (19 residues), see Phobius details amino acids 333 to 357 (25 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (399 amino acids)

>mRNA_8005 BLAST alpha- -mannosyltransferase alg11p [Moniliophthor... (Rhodosporidium toruloides IFO0880)
MPSLTAIHLPLLGYFALIGALTVAILPNFTSAKRWNRAAVGFVVLAFVSLGVTWTYMFKY
FVKSFEDSALRHGLPSSAFTTQAWLSDVSLFQEAWHYVCDGAERWWWSQQLCMWTAGPLT
LLLATEGFRFGVKRVWAFMLLGQVVAISTAQSLFFAAVILAALNNPEPTFATLDARTKFY
RRINFGVLVGIVFGTASVMFVPNTMNTRAFLPNLLLMHVLILVPLLPPVAAIDKPGHPRL
SRLLLNFTLVGLRFRVPNVIELLGTEQAFSLEVLRNDFPALLKAEWDVLRSHPAQSSISW
DVIFATVSGLAYVVYSSRSSTLRIRPQERVSPLVLAAMVVTTPLVGVASTASVGIAVREG
KREAREDAEEALEKARREQAARAMANLGQAGRVESQKDK