Protein Info for mRNA_8007 in Rhodosporidium toruloides IFO0880

Name: 16375
Annotation: KOG0590 Checkpoint kinase and related serine/threonine protein kinases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 864 transmembrane" amino acids 539 to 555 (17 residues), see Phobius details PF07714: Pkinase_Tyr" amino acids 356 to 547 (192 residues), 84.6 bits, see alignment E=7.4e-28 PF00069: Pkinase" amino acids 358 to 564 (207 residues), 154.5 bits, see alignment E=3.7e-49

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (864 amino acids)

>mRNA_8007 KOG0590 Checkpoint kinase and related serine/threonine protein kinases (Rhodosporidium toruloides IFO0880)
MLDSRAETYSPANASSGGEGDSSAPASSRSSTLASSVSDFDDSSLDQGARLARSSGWATG
GSATPSDGSRSQVPSRQASSVGLGFLGAEGRRGGGDATPASSDAASTYSTTSSSTTPVRP
GGPHFQMSHHIQRVNSHHRSIEEPLPADHEPEHGPPDYTRLRQVADKLPGRAMESPQRGM
LPRHGSFQESSPGSSFASSSMVNVQGPSGSTTPGGTATPPQFIFAKIGERKRAASHSNLL
SMSRQTTKTHHPGPLHDLRRFLNDHLHHGKGHHHDKHHGGSKFEIGGGSDSHASTPRSGK
SSPRGTSQPGTPSGARTPVEKDYTDTALHPEYHSHGRNSPPLGEDHAHLQKKYGKWGKVL
GSGAGGTVRLIKRSRDHTVYAVKEFRAKRAGETDREYVKKVTAEFCIGSTLHHPNIIETV
DIISDHGHFYEVMQYAEFDLFSIVMSGRMTRPEIYCVFKQIVDGVDYLHSMGLAHRDLKL
DNCVMTQDNTVKLIDFGTAVVFRYPDQKPTKANGIVGSDPYLAPEVIAKKEYDPRLTDVW
SVAIIFMCMILRRFPWKLPDAKSDASFRLYVSSHPELCVSPTTPNATVGGKPLPSRASTH
DTVSRMTTKSGSSSPGGLDSGYNTNLSGANVDGGGRAREGSVPAITPLERTQSPSSMSAG
GGPDSPALSAGGDALAGSVGSLRIDENPAAAEGREHQLSTGPSRESNLTAVEDSSAVGHA
NTLTPSRRPRTADPGPPPAPSSGLGTSDKLASSSPAGRHRSDSVASNATWTTGAADSIFR
LLPRETRSCLTRMLTVEPTIRCTLADLLRGGEGDDVDEERRDDWLPNIKPCIYNKGAMTG
SRDDYHDHIKIPADNGKMPKHPKK