Protein Info for mRNA_8032 in Rhodosporidium toruloides IFO0880

Name: 16400
Annotation: K14007 SEC24 protein transport protein SEC24

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1034 PF04810: zf-Sec23_Sec24" amino acids 322 to 360 (39 residues), 52.9 bits, see alignment (E = 5.9e-18) PF04811: Sec23_trunk" amino acids 408 to 658 (251 residues), 190.7 bits, see alignment E=6.7e-60 PF08033: Sec23_BS" amino acids 664 to 748 (85 residues), 67.2 bits, see alignment E=3.6e-22 PF04815: Sec23_helical" amino acids 759 to 858 (100 residues), 87.6 bits, see alignment E=9e-29

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1034 amino acids)

>mRNA_8032 K14007 SEC24 protein transport protein SEC24 (Rhodosporidium toruloides IFO0880)
MDPRQYAHPQGHAPPSQGQQYAQQPAHYSQHSPQGLTQPGHQPPYPPLPAHNAPPHLNPN
LAPPGQDPHGRFSPMHSPAVSPGMEHLSQGVAQMGLQPPQATTPGGEPMPSPAVVPARGK
RAARAYHNEGASPAAQMQPSPADFQQPGQQPSYFPPQGQPQHAGAAVGHQQQPHYQEAPP
PHLARDPRTAPPASHHDSNGPGIPQPPHTAGQRIPAKQRVRIDPDHIPSPVAVQEADQNL
YRVEPYLTCSRNPAPLATTDFVAVDQGNCNPRFIRMTTYNLPTSDDLALASQLPLGLIVQ
PFAALRPEEGSIPVVDFGESGPPRCERCRGYINPWCTFVEGGQKYICNLCGASTQVAPEY
FSHLDMSQRRMDLDQRPELRLGSVDFVVNRDYWVQDNPNLPGSQPREPKPLHHVFAIDVS
YTSVQSGLVKEICTHLKELLFPPKEGEAEENGVFPPRKGLPVGAKVAIMTFDRTVQFYNL
KPGLDQAQMLVVPDITDMFLPLNDGFLVDPLEARPAIEGLLDSLPGLTAETSIVEAAMTG
PLKAAMLALKSIGGQLNIFQTSLPTIGLGALKHREDNKLYGTDKEKTLFGPQDPFYRIAA
EECVEAGIGINLFLFPSQYIDAATLGALPGLTGGDLFFHPRFNPVRDGRTLRAELGRVLQ
RETAYSVTMRIRCSNGLRVADHYGNFFQRNVTDLEFGTIDADKAVAAKIKHEGKLDEKAD
AHFQCAALYTSAAGERRVRVHNLAVPVSSLISGVFRAADMDTTITFLTKEAITHASSKTL
RQVREQLTDTCVNSLLAYRKHCASSTSPAQLILPESFKLFPLYSLAVIKTKALKGGTVAS
DVRTWAMRQLKAMGAPATVRMLYPRMMAVHLFSDDVGFPDERGQLVLPPLMRTSYSRMEP
HGAYLVENGERAILWLGQAVSPQLLQDLYGIENLDELDTRLSTLPNLPTRLSAQLRNIIT
YFESRSGVGCIPVLIARQNIDGTEFEFSNMLVEDSNNEQLSYVDYLCMCHQKIQSTLMGE
KNKDVADSSSWTTW