Protein Info for mRNA_8033 in Rhodosporidium toruloides IFO0880

Name: 16401
Annotation: K08488 STX7 syntaxin 7

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 275 transmembrane" amino acids 255 to 274 (20 residues), see Phobius details PF14523: Syntaxin_2" amino acids 37 to 136 (100 residues), 78.7 bits, see alignment E=5.6e-26 PF00804: Syntaxin" amino acids 94 to 216 (123 residues), 30 bits, see alignment E=6.1e-11 PF05739: SNARE" amino acids 219 to 267 (49 residues), 45.7 bits, see alignment 8.1e-16

Best Hits

Swiss-Prot: 32% identical to STX7_HUMAN: Syntaxin-7 (STX7) from Homo sapiens

KEGG orthology group: None (inferred from 45% identity to scm:SCHCODRAFT_52564)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (275 amino acids)

>mRNA_8033 K08488 STX7 syntaxin 7 (Rhodosporidium toruloides IFO0880)
MSFQDLERGLGERAPLARDTAINPDEDLQFKALARSISVQVQKVSANTAAIAKFVDLLGG
GKDNPTLRNRLHDLTESTREVLKGSTGDVKRLNEWKLSPSDRHHRQEQQKVAADFQRALE
TFQSVSRRSAERQRLFVERAKASVDAAEDRGASQDDAASSGQLLELQETQQQISDADADF
QEQLIQEREGEIAQIEQGITELNQIFKDLGQIVGEQQSMIDNIETNVISVARDTRGASDQ
LTQAHAYQRKAGRRMFCLLLVFLLVLTTVLLAVLL