Protein Info for mRNA_8041 in Rhodosporidium toruloides IFO0880

Name: 16409
Annotation: K13350 PXMP4, PMP24 peroxisomal membrane protein 4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 228 transmembrane" amino acids 176 to 193 (18 residues), see Phobius details PF02466: Tim17" amino acids 21 to 128 (108 residues), 45.9 bits, see alignment E=3.5e-16

Best Hits

KEGG orthology group: K13350, peroxisomal membrane protein 4 (inferred from 57% identity to cci:CC1G_04428)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (228 amino acids)

>mRNA_8041 K13350 PXMP4, PMP24 peroxisomal membrane protein 4 (Rhodosporidium toruloides IFO0880)
MSSSLVAALDRFVTTPAYHDILAILKGARNGLVYGAKVRAPHALVMTMVFHSGSLKQRLL
YVYRATKQHSLNLARFVTIYKTALLLQKTLAGGKERQFDTFFAGLIGGWAVFGERNAVNE
QIVLYVVSRVITSFLPRATPSVPAAKAATTPKTAPNGFPLPPGYPYPKSRPPHPKVFELY
AAVAWGMVMYLFRERRDRLHGGMVNSMQYLYLDSEVWTGLKTLLWHNR