Protein Info for mRNA_8053 in Rhodosporidium toruloides IFO0880

Name: 16421
Annotation: K03037 PSMD6, RPN7 26S proteasome regulatory subunit N7

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 394 PF10602: RPN7" amino acids 74 to 244 (171 residues), 186.4 bits, see alignment E=3.7e-59 PF01399: PCI" amino acids 260 to 363 (104 residues), 55.6 bits, see alignment E=6.8e-19

Best Hits

Swiss-Prot: 48% identical to PSMD6_HUMAN: 26S proteasome non-ATPase regulatory subunit 6 (PSMD6) from Homo sapiens

KEGG orthology group: K03037, 26S proteasome regulatory subunit N7 (inferred from 54% identity to lbc:LACBIDRAFT_299976)

Predicted SEED Role

"proteasome regulatory subunit Rpn7" in subsystem Proteasome eukaryotic

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (394 amino acids)

>mRNA_8053 K03037 PSMD6, RPN7 26S proteasome regulatory subunit N7 (Rhodosporidium toruloides IFO0880)
MASVSTAPSAGDDAPLPIPNLALPQLAFVLTEPKAQHKREGAQERLLKGIEDDEMAPYLS
HLTSTSVLPPQSDLLSRLQQRNKDELARLDTKLEDAKTNLGETEVSDVLRERAMYLARIG
EKDEAVKAYEEAFEKSAGKGTKIDLVLSIIRIGFFHSDHELVMSNIDRAQKLVDEGGDWD
RRNRLKVYEGVHLLSIRNFKKGADLLLDALPTFTATELIEYDDFVVLCVLAGVLALERKD
LKKKVIDAPEVIAVVPNVPTIKNFAESLYKSDYATFFRCLATVEEHHFLPSRLLSVHSRY
YTRELRVKAYAQLLESYRSVTLESLCSAFGVSKEWLDNDLARFISSGRLTCTIDRVNGVV
ETHRPDAKNARYNAVIKQGDAVLTSVQRLSRVIG