Protein Info for mRNA_8064 in Rhodosporidium toruloides IFO0880

Name: 16432
Annotation: HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 701 transmembrane" amino acids 507 to 528 (22 residues), see Phobius details PF04082: Fungal_trans" amino acids 230 to 366 (137 residues), 22.7 bits, see alignment E=2.4e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (701 amino acids)

>mRNA_8064 HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701 (Rhodosporidium toruloides IFO0880)
MDGRASPSPQGAAEPTDAGAVAGPSSVAAGQAQTEGAAGPVKPGGAKISCLACRAAKRKC
HTPDVHTTCRRCVTHELVCEYQKHRRGRRKKETSASAPADASPSSLPTVPLQPPVYPPLP
QLPAKQASTYGSAPGTAQSHASQSPTGTGASTIQFSHVVREGDSSPFIAGPSTAQPPPSG
SGSFGLLRSNYPDPLQAGVLNELDVFELFNYYFENLNLVVAILDPRLHTPNYCQQKSALL
FSAVLCVTAKILRPDAYSACLAIANKLVGQAVEYGLCSVEVVQAINLLTHWKKADDATSW
RKVGYAIRMAQELRLNVRASRPLPAEEMQARGILNRERAWLNLIIADYHLAIHHSLPRMI
SEEDIDDPAEWLAEHPHLPTPGESSLPPWIIFSRMCRLYADLLAAMNGDPSNLRSLKWIE
HDWHRWRAKWLDRPDFLPPQVSTIRLCDALFAFHLAEYRLLYNYRYRAKDQVVNVDVPSD
LTIAFCGCVDAAVGLANVFQDHFVRPGYLPFCFNLAYVALAICSIWLVKNIATMSQSDRE
RVVRTLSDIQVAVEAASRSSDDMPAYMHRLLTHLLSTLSPATQLSSLAASQNASTLTQPV
SQDAQDYPSSGSNSSWSLSSAQQIIQDNLHHHHPHPALPPQQEQQPFASTSTATLPQQEQ
ADASVFAGLDALPMHEDMLFPAADDDIWRLLFPVTGDTAMQ