Protein Info for mRNA_8065 in Rhodosporidium toruloides IFO0880

Name: 16433
Annotation: KOG0732 AAA+-type ATPase containing the bromodomain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1565 PF01695: IstB_IS21" amino acids 559 to 644 (86 residues), 25.7 bits, see alignment 2.7e-09 PF07724: AAA_2" amino acids 560 to 658 (99 residues), 21.1 bits, see alignment 9.3e-08 PF00004: AAA" amino acids 560 to 695 (136 residues), 141.5 bits, see alignment E=6.9e-45 amino acids 862 to 943 (82 residues), 22.9 bits, see alignment 3.1e-08 PF17862: AAA_lid_3" amino acids 722 to 755 (34 residues), 39.6 bits, see alignment (E = 1.1e-13)

Best Hits

Predicted SEED Role

"Cell division protein FtsH (EC 3.4.24.-)" in subsystem Bacterial Cell Division (EC 3.4.24.-)

Isozymes

Compare fitness of predicted isozymes for: 3.4.24.-

Use Curated BLAST to search for 3.4.24.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1565 amino acids)

>mRNA_8065 KOG0732 AAA+-type ATPase containing the bromodomain (Rhodosporidium toruloides IFO0880)
MTTDRPRRAASQRRSTAEPDLYSSHGQRAVGSRRSARRGSREVNYAGQDDDDEEEYVEME
GEEGSEEEDARVQRAKRRGKEVRYNEDEFKQEEGEEQFSAEEEEEEYQQQDDLPLHPQHL
PPLPLPHAPTANQNPLVIKLNVTRTATPATPAEAPPADAEGEEDADAAGEDDPDAYADPH
AAYAPHEAYQNGHVGAGDEEEDEEGVGGRRLRPRRQNAIHDSEDSSTDANGAEGHSLPPR
VFTTTSSGRQTRRPAHYGESADEEDYKPDAEGRRGGLRRGGRAGYHGDGIEPDEEWDGED
GEYGSGARRGERSRRSSRRTNDRQQQAARQLRSQRAGRSTRNSRKAVDQSYEQDEDETEL
DTDEEMLDLQDDDDDSLGRGEGSGKRKLRNKPRINYYVPPPNEVAGLNAGKDAKGKGKQR
RTDEDGNPFAGLPANMTGAQWAALYPEGGQPGSDSSDDESPNLSSPRKAALFSGPGAAMT
GGMLAGGGLDFGSGAPSNLGKVNNVAALADTDPLGVPTSISFDSVGGLGQHIQQLKEMVS
LPLLYPEVFERFNITPPRGVLFHGPPGTGKTLLARALAASCSTEGRKISFFMRKGADCLS
KWVGEAERQLRLLFEEARACQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGMD
GRGQVIVIGATNRPDAIDPALRRPGRFDREFYFPLPNLEARRKIIDIHTEGWNPPLDDGF
KDELAKLTKGYGGADLRALCTEAALNAVQRTYPQIYKTNDRLLIKPEQIEVTARDFTISQ
KNLIPSTARSTSSHAAPLPPQLVPLLADSLEHAKTALAKVLPEVKKVNVLEEAEFVDEGA
GFEKEKMLQAFETLRVFRPRLIICGEPGMGQSFVGAAILQHLEGFHVQTLDLATLVSDST
RTMEAACVQLFVEAKRHKPSILFIPSLVTWCASVGETVRSTIKGLLDGLDPSDPILLLAV
VDGHFSEVPADVRSWFGFVKGNRVIIGKPSNDQRRAFFEDVIAGIQRPPNEYPDGVPRRK
RVLEKLPLAPPPPPRAPTAAEIAQQQQNDLRLLEYLKWRLGPVLSELKKRYKRFQRSLYK
DWQSDDLEWRQEQLRRGQEVTGLGKQPYHNVDLDTMASDLYKGFYYTPDDFLDDILRIQH
NAEVNKIMENDAEAPIRAGQMVNHVKVMLDQTFDANFRAECSKMAERMLEKEKDAPRKGR
RKGRGGSLPPEDGAVAAAETAAAAGGAFKERYNARTANGAEDSADATDTQEAGAGGVGDA
EGQLKRARTGTGEHAMEIEPGDEHGPAKRQRTDEDGDQDEQMRAIQHHQAAVDMADGQAA
ASTSSAPNGYPAGFVAAPPQAGPSGFHDLLNPTTASSLAAFADPVVAFSEPQQNPFAPTV
AAVAPPMPVGAAPSEATITAGLPAPAAAAAPSFLNGTVPASATSANLFGAPAVVQKALSV
NGGSALPSRDGTPTPLGMNDAPAPASEAGSARQASAAPEKERTPTPEPTPPPPPPFVVPT
HAVDCLYSFLVEKTDALNIDQLEQLRAACYDAVWRGRTEWDRTAVVQELDELAKEFVEEV
EALAA