Protein Info for mRNA_8066 in Rhodosporidium toruloides IFO0880

Name: 16434
Annotation: K20181 VPS18, PEP3 vacuolar protein sorting-associated protein 18

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1140 PF05131: Pep3_Vps18" amino acids 370 to 523 (154 residues), 151 bits, see alignment E=3.3e-48 PF00637: Clathrin" amino acids 732 to 870 (139 residues), 37.7 bits, see alignment E=2.8e-13 PF10367: Vps39_2" amino acids 881 to 979 (99 residues), 26.3 bits, see alignment E=1.3e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1140 amino acids)

>mRNA_8066 K20181 VPS18, PEP3 vacuolar protein sorting-associated protein 18 (Rhodosporidium toruloides IFO0880)
MDDFIGGSGSAGLELPTKGFEDGAVYEAGHSEEPDAPIFSLGQVQFTLPSALHSLSCTNN
VLVLAVTGSPPTSSSSTASTRPSPPQLIRIDLDHPTEVETIDIPVPLPAPLTSRSTSAPP
PPPSSNLHKLHVDPTGRHVVVSTTTGDNFYAFVGADLPTPSSGQPQQRKAKPLTRLKGAI
IDSIAWSPSSSPSSSSTVSIFSTREILLGTSSGQILETTLLDPSLSSSSGDHFLPMHVPG
TSSSRSPERYVKQLLTLPDRQAIEGLRYEVWNGRRVAVVASTRTRVYQFVGTGTGGVGGG
KGAKEEDVSALLEGVLHPYATGDARPKMLELPGEPATSELHFFAPGRTDREGVVMGMQLP
KSMAWMTGPGIYHGQIVFPSSSSDLHPGDGIIDSASLNPYPSSSDVHEQPDQPISMALTE
WHFVLLYEDRVCAVDLLTDKIVYNEPLDLPPTSRPLRLSTDPLRKTCWMHTDSAIYELVI
RDEGRDVWRVYLARGNWELARRFAKTQRQRDSVLAAEADSYFSAGRYIQSAQAYAQSSKP
FEEVVLRFVDKDERDALRYFLVVKLERLKRSDSTQRMMLATWLVEIYLAKINELENLAAA
ERASEDADNFVAERGMVEEDMRQFLVTYKDNLDHRTTFDLLDRHGRDDLALYYASVVGDH
ERIVQHHVAQEEWVKALQALSKQESLDLYYRFAAVLVRHAPKETVDAFLRQPRLDVRRLI
PALASPRLSSSEQKPHDHLIRYLQHVVLEQRNTDPAVHNTLITLFATSPSADEAAFVSFL
ESSPTNPLTGDPYYDLDYALRLCRTHKRVQACVLIYSKMRMYESSVDLALERDDLELAKI
CADKPEDDDLLRKKLWLKIAKHVVGKKNDIKTAMQFLESTSLLKIEDILPFFPDFVVIDD
FKEEICSALEDYSAHIEKLKEDMNEATRSAEAIKADIAELENRFVVVDANEKCGACAQQL
LTRQFYVFPCQHCFHADCLIQEVTKSLSPTQLRRMLDLQSKLAPSSRQPHTASRSRTLLD
DTSSQGLKLAAASVQAVDQLRKLVLPDALMSAIGGAIPLPSGTVQKVRSSFAGAPASSRR
SRDLQQGRGEKVPSAREVKEEQEKEALRRQLDDLIASECVLCEGAIRNVDKGFVEEGEEM