Protein Info for mRNA_8080 in Rhodosporidium toruloides IFO0880

Name: 16448
Annotation: HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 713 transmembrane" amino acids 36 to 60 (25 residues), see Phobius details amino acids 90 to 113 (24 residues), see Phobius details amino acids 257 to 290 (34 residues), see Phobius details amino acids 342 to 365 (24 residues), see Phobius details amino acids 434 to 450 (17 residues), see Phobius details amino acids 456 to 473 (18 residues), see Phobius details PF12697: Abhydrolase_6" amino acids 342 to 577 (236 residues), 32.5 bits, see alignment E=7.2e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (713 amino acids)

>mRNA_8080 HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474 (Rhodosporidium toruloides IFO0880)
MSTFACFLTSRNTSSNGLDGTLGGIMFPDSFISRSALRLLILALDSTVPLSALWLIAAYF
CHPASPAIAFTTWLPVSDAAELVLRFRHPLALLTLWAGAEVAWWIVSCIARVGLDRNWWG
ERQDDEEIGSEERWRLWKSMLESTRDPWDWMGSAFLPATHKRAARGAADPALKKVKMETV
GRTNVEEFIAHFMFNANLRDLKRDSLARAELHSMILLLEAQITLSRPGSQPFRFLRGRSR
HRVFQLSHEPLSVGHHPLVFYAAIAFVSQLSNFILYLAGFRYYGAGAWTFTPFFMRSSRR
SLESVLDPLEASRMGDARLAERVGYWMKPASKKAQEEDLKPLVFCHGISGTFVLTPFLLC
MSYLTGRAIFLPELPYVSMRLSPPSAILTRLEYVAAVRRMLWAHGFGLTSLDADENDSDF
DEEHDEEEWRRGKAIVIAHSFGTGAAAWLLRDAPDIVAGSVLIDPMSFLLFASDLPRNFF
RTKCTTTGEIFFRYFAVERGINHFLSRHLRWSDSVIFGPRPVAPLPERVIRALVPECAQE
PLEPPFDMPNYAQWVSPCPEGPLPSVVFLSENDCILPIEKVRRYLEASGFSTGAPSSGNA
SAVKEVLQIEGKQADGPEGEMVADGVADTDKPDSEDESTLVSSSTSLIDPSTSSSMTVAP
SKAAEPSLYVVPHAEHGAILTPRVIFAQEWPKRVRDAIDRVEQAAARWEAMDD