Protein Info for mRNA_8085 in Rhodosporidium toruloides IFO0880

Name: 16453
Annotation: HMMPfam-Glycosyltransferase sugar-binding region containing DXD motif-PF04488,SUPERFAMILY--SSF53448

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 780 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 351 to 373 (23 residues), see Phobius details PF04488: Gly_transf_sug" amino acids 148 to 229 (82 residues), 69.1 bits, see alignment E=2.1e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (780 amino acids)

>mRNA_8085 HMMPfam-Glycosyltransferase sugar-binding region containing DXD motif-PF04488,SUPERFAMILY--SSF53448 (Rhodosporidium toruloides IFO0880)
MSVKRAITVLVILIALILAGTAIVLSTVVQYFGVDARDVIQEHEMALVERLANETAKTPD
AGKQHVVVPPADEATAEPAGVLVETDVEGAARDKSVKDLLQRLEERGWLADNSTLAAVAA
AGEGGRDDLPQPRIPKVIHATWKTDILPERWEKVRQGCIDLHPDYEFRLWSDAASRAFIA
EHYPWFLSTFDGYTYPIQRADVIRYFVLHKFGGIYMDLDIGCRRNLDPLRYFRVILPQTI
PVGVSNDLMFAEPAHPFMDLVIHNLITFDHTYGTNYPTVMFSTGPMFLSAVYGMWPKDTP
DGVERQVRVLPRRWYGKNAPATEMEDSYFDHYYGSSWHADDAGFITFLGKFGMALIYAGL
AVVVLGVARLLWFRRSPFKATPRQIGPIALPYEALPFARPGSPGSRPGSPFGSRSGTPSN
RFRRSEDGPAASTSGDKPSGLFYMPVWLFPSSDRSPGSRTPDGAQSTGAWSQYFPNLSFV
DDGSGSQHRYQPVPNFSRPPSPGAGGNDNDSILHAPGATHDGAFDGVHLHSFQPTKSASG
HDASSSTSSVHHGSQYPANNPQTPTSPNPPAYSALRSWGTSLFRGSSFPQQQHHQHGGSD
TKSPILPISNADVRDDVPSPAAAGEERSFQAPRLRLPAHAVRTPSPPEYATVVGTGRAPP
SPRRVELEGDGTPHARIEVVDARSGPARTRSVERRSSAPAATETDGDRSIERHPSWNGRD
RSIEDQVDAELAGEDAFGRRADAAGVRTRRGSDAEEEFGRVEEEVDKLLSEMSPAEGESP