Protein Info for mRNA_8094 in Rhodosporidium toruloides IFO0880

Name: 16462
Annotation: K10775 PAL phenylalanine ammonia-lyase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 716 TIGR01226: phenylalanine ammonia-lyase" amino acids 33 to 715 (683 residues), 912.5 bits, see alignment E=7.8e-279 PF00221: Lyase_aromatic" amino acids 67 to 539 (473 residues), 486.4 bits, see alignment E=4.3e-150

Best Hits

Swiss-Prot: 99% identical to PALY_RHOTO: Phenylalanine/tyrosine ammonia-lyase (PAL) from Rhodosporidium toruloides

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (716 amino acids)

>mRNA_8094 K10775 PAL phenylalanine ammonia-lyase (Rhodosporidium toruloides IFO0880)
MAPSLDSISHSFANGVASAKQAVNGASTSLAVAGSHLPTTQVTQVDIVEKMLAAPTDSPL
ELDGYSLNLGDVVSAARKGRAVRVKDSDEIRSKIDKSVEFLRSQLSMSVYGVTTGFGGSA
DTRTEDAISLQKALLEHQLCGVLPSSFDSFRLGRGLENSLPLEVVRGAMTIRVNSLTRGH
SAVRLVVLEAFTNFLNHGITPIVPLRGTISASGDLSPLSYIAAAISGHPDSKVHVVHEGK
EKILYAREAMALFNLEPVVLGPKEGLGLVNGTAVSASMATLALHDAHMLSLLSQSLTAMT
VEAMVGHAGSFHPFLHDVTRPHPTQIEVAGNIRKLLEGSRFAVHHEEEVKVKDDEGILRQ
DRYPLRTSPQWLGPLVSDLIHAHAVLTIEAGQSTTDNPLIDVENKTSHHGGNFQAAAVAN
TMEKTRLGLAQIGKLNFTQLTEMLNAGMNRGLPSCLAAEDPSLSYHCKGLDIAAAAYTSE
LGHLANPVTTHVQPAEMANQAVNSLALISARRTTESNDVLSLLLATHLYCVLQAIDLRAI
EFEFKKQFGPAIVSLIDQHFGSVLTGSNLRDELVEKVNKTLAKRLEQTNSYDLVPRWHDA
FSFAAGTVVEVLSSTSLSLAAVNAWKVAAAESAISLTRQVRETFWSAASTSSPALSYLSP
RTQILYAFVREELGVKARRGDVFLGKQEVTIGSNVSKIYEAIKSGRINNVLLKMLA