Protein Info for mRNA_8099 in Rhodosporidium toruloides IFO0880

Name: 16467
Annotation: HMMPfam-SUR7/PalI family-PF06687

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 251 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details transmembrane" amino acids 141 to 161 (21 residues), see Phobius details amino acids 182 to 202 (21 residues), see Phobius details amino acids 227 to 248 (22 residues), see Phobius details PF06687: SUR7" amino acids 10 to 236 (227 residues), 30 bits, see alignment E=2e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (251 amino acids)

>mRNA_8099 HMMPfam-SUR7/PalI family-PF06687 (Rhodosporidium toruloides IFO0880)
MNHIYHSLNPLILLTAFLVSLLAFLAPTPILSDRVSLLSVETTKSSSAKRWIDDAAGPVP
AAHSRRMMKRAKAKSAAATTTVPVSVDLGPLGACYTNSTTHSKSCMSPSFTPIFFEMYSD
VGLSSAVVNALPAQFPLTPTALFVSLALMALQFLAVLVSSISMHATKKLAFLTKQQGKVR
RAATIMGVISFVVGLAAAGAMRVQLGKAASAINKAGGAKASLGSGFLQFWAGYALLAVAD
VLLVVEAFTSR