Protein Info for mRNA_8112 in Rhodosporidium toruloides IFO0880
Name: 16480
Annotation: K14772 UTP20 U3 small nucleolar RNA-associated protein 20
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (2843 amino acids)
>mRNA_8112 K14772 UTP20 U3 small nucleolar RNA-associated protein 20 (Rhodosporidium toruloides IFO0880) MGKGKSTNARKAQAASSGSGGSGTLRSLRHAASSTSSPKPAPKVRSTASLTVAERIAKKA EKPLVKGRSFRFVAPSDRIAKMKVDLEGVRDRREQLEGEDEAQEDDMHTLFGHALQQSQL IDLSLPFGRFSRKVDKWSRSLPLVVHYKKEIVEAVCEALSSGSKDVELCGETILDLLPPL ITDLSHLLLPSLPLLLTTLIRLTAPSPFHASNPRILQRTYDVLGALFRDLARDVLGAEEG EGGLREVWEVVRRGLGAPARVDDAEEEEDVQMQDDAEQKADGAESDAESSADEEEEEEAE PVASTSAQPLETPAQTGLKLHTSLPANFRTTPQTRRLLGNAFSLLVRKAKPTSSDEPGSL DALLRLMVGDVAQVEEVDGGERANGRRGAKGRRKGKGKGRGQEEGSSNVFAEGLTWVIIE SCSAANHFFHSRTPSILRSLFSAILSLPSLADVSLPREIVSHALVTLSQHAEKVEALEPV GEAAIKTLEAELKTATAGGEVAWERLLVPLQAVTSFVGVKAGARLPASLKPRLFASLAPL SRLIAHSPAPPSAFLHHTTAYLSTVLPLAVLSDVLSSPVRSIIDALFSADRDASVFASAC ALATTLDGVEWPLWDTALGAAVFTATAREVSSSSSNGKAKTDASAFDELVASKKENSLVL LARLAESGRLRALVEKGGAHVVAWEKSVGALAEQAIKGWKEAFEADRNIDEEKTHELLDV LAIVPFIPSRRNDLLVLLADLAQVVATMPATEARVAYLSSAASPALVLGSTLSAFEATSS RLKSPSPALQTLATSVELIIAHFAWHRRVMHGLSSLSLARLASDRSPEARKAIYDAILPN LLSEDSVLRRSSLEIAQTLYPENEAPVAADLIAKCIEVEDMPLTVQGAREKSMKVRKLGI VANSQLGKEGSAEELEPVLEVILRYLTAMLKVNFKPIWPEAISALALLSSRFPDAVWSIC SRQLLAAATRGSDLYVARKPEWSLHAASTEGVGELELVFEEQALRDWHLEDRRTRVQKDE ARFEGGVIAVASREEGLVSLQVTPERLVIHSYEAQLLALFCQIPDLAQRHSRDFVDVFLG CFQRDDVIPDKADETPLYFNADETAKDRKARLLAWLGLFAKFSNPKALYRAADLDAQFRT LLAFPDAEIQKLALDCILRWKIPAVTANADRLKNLLEPTKLRDELLEFVSTTDAGGLEPA HRADVVPLFIRIAYGLMTSRLGRASASSGQGRAGRRAAILGALRTCSANELDTLVDLLLG PLRKLLVTPPGESFRFAEQAPKVPGKRQLGFLGLLADVVKHLGKDIVGRWPDLMGTVLNL LHFAQKGLDEDARAGKENAEETKADEEDEDDTEDEDDVTQLAPLRHIRQTALKRWTDFFR LEVDFDYRPYVSAAFPSIISPRLPTLAAENAQAPSALLELFVAWSKRRDQLRFLVDYDAS LLPSLYHVLTVRNVKPTVILRVFDLVASVVEFAEEDGGKASDIGQQVLQPGVDVLLVQLG GLIAVTSSTLDAKGEVAQRQIALLCSLAPYVQSEEQSINFLTLATPLLRKTNKTVPEKVK TDLLRIVTALYPIARPQPSTTLYDKCCEVVASLFASSRSRNARLQLVAALNSIASVDESY AQVAQLVDDLNSYSVKRSEEPDFDRRLAAFSRLNEELYQTLTPADWTVVIQNMLFFVQDA DELSIRSNASYAMRRFIEVVNTGSDDALRVLFIRTFLPGLRKVLRSKVELIRAEVLAVLG HAVEKVEDVPELEQLKVLLVGGDQEANFFNNILHIQNHRRTRALRRLADAVEAGGISSKT IADLFLPLLDHFVLGSDEKKDPDLVNETVQCLARLAQRLAWSAYSKLALHYLKLAKAGGV PQKACVRTLVGVLKAFRFDLASEAKALESTTGRLVPQLMSYLEKRDDSDQEIRIPVAEGI AAVIQHIPGESKHVQETGLLMALAQSLRSRDQHVRDLIRVTLANIATAQRGDILGRIVKE LRKALMRGPQLHVLAFTVHALLVRLVESPENVDFDAALDEVVPVLEEDVFGNPSKDRTSQ EFRAKTKFREVRSFKSLDSFQLLARVVSPGKIATLLAPLRGILSTTDSAKPIKDVEEVFK ALAIGLTANTQLDAIATLDLCHSLISQNAAFLKAVKVVRKHGKAAPDYHVQFERERDETR DYYAKNAYRFVSFGLELFNAAFRKSVFDLDSPDVLSRLEPLVSLVGNSLYSDDPVVLARS MRATASLIRCPLSSTEKAAPVLVKQMLSVIERAGSTESELAQSALRTLSTVLRDCKTATL SEKQLTSLLELIGPDLEEADRQATLFQVLRAVMSRKFVAPEIYDLMNKVAEMLVTNQSSN VREVCRAIYLQFLLDYPQGRGRLKESLTFLAKNLSYTYESGRLSVLELVSAILNKFASQL VQDSAELFFVALVMVVANDDSTKCREMAAELLKLLFSRLEKDTRDVLLTMLHSWAGKKAQ PQLARTAIQVFGIAVDAMGDDGRSAAPAIVDVLLDVLTDSEDRLEEAETRGGDALDLEAD WQLPYQALQATAHVYKAFPDLVSPDMKTVQPLWKAVRGHLLYPHLWVRTSAARLLGSLYA ASQEALDRDDLPERHPLATSNLFDAAQKACLQLKSPLLDDNLAMQIVKNLFFAARCFAAR DSRSADARDEDGDEEDHEDGDATEEQRKADPLKWLFTRLSYQARQAHMLRPSVHDTDAGQ WSRQPASILRWFAAMISSLEAVALQRFLMQMAVPIFRISEDTVLNDPQMVELQTLSREVQ ELLQQKIGTTAYAQVHNQIRQRAAARRNERKQATALKAINDPVEDAKRKAKRAEQKKTQK KRKAASMASQKERYGVGAKRRRE