Protein Info for mRNA_8127 in Rhodosporidium toruloides IFO0880

Name: 16495
Annotation: BLAST CigA protein-like protein [Phycomyces blakesleean...

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 775 transmembrane" amino acids 106 to 125 (20 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (775 amino acids)

>mRNA_8127 BLAST CigA protein-like protein [Phycomyces blakesleean... (Rhodosporidium toruloides IFO0880)
MPLPLHRTTSSRSSSRANRPPSLTLSPSSIYNFDETDPFLSPTTPRTAPLSPRFLHPSSP
RTPGSPYSQPGTPLSPFLRADGRPQTGFFDNLPIPPTAKRARGKTWIVAGVTACFLLLLA
FSLHARTDDGGIEKPQGVVLAVHDELSKLKDWAGSLTGGRIGSATGGAADDEEGARTAVV
GSAFSTTEDDFVDDDGESEIRIKPLPRPRLPNLEDHEERYLGFLPHSGYHNQRIALQNAL
LLGKLLNRTVLVPPIWIGWPTPTQYYADLRQSWLNIMLSTPSSFNISTLTPSSPLNDPAS
YPSTLTSFPCPTCVADNATHLALVSAANERKLAKWREKGYEVRPDGFPIVPGLGEKDCKS
YSPECRFTYKDTFLAWDWLVDLEKVREEGVRLVDRWDMRERAVMDLLEVKEDDVYIIEDR
QVYDFQFTDALNSTDPLISNNTLPTRWNRLVSLPRLSELPHRVLFVGSLFGTNRIWTSDP
SQARAEATFARAMAFKTPWLLRPADAIVERLGGMRMRDGFVGVHARVGDGEFARHARGNM
ERAWGELVERLGVREEVREEMWAIASREREEREERERRRNDGHRVKRAQHAVLSASAGAV
SAWASVDEYDAEPERQTSQAKRVKRSIVDDLLSHIPYLDSTQPALELRNLTCRRPLHTDS
RFSAFNTPLYLATDSRTPELDPNLAPFFTSFPCTFVLSDFDTSDVARNDGVAVASVKQMS
RLVNDLDGVGLGRLFLPFLEAVVAARGRITVGTEHSTFSAFASTDLHDAYWEAVR