Protein Info for mRNA_8128 in Rhodosporidium toruloides IFO0880

Name: 16496
Annotation: KOG0526 Nucleosome-binding factor SPN, POB3 subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 256 PF09011: HMG_box_2" amino acids 94 to 160 (67 residues), 39 bits, see alignment E=1e-13 PF00505: HMG_box" amino acids 97 to 164 (68 residues), 58.1 bits, see alignment E=9.5e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (256 amino acids)

>mRNA_8128 KOG0526 Nucleosome-binding factor SPN, POB3 subunit (Rhodosporidium toruloides IFO0880)
MSDAKHNVIAALQQVGHFHKELAKAHRNANDAIQAYAQSLDHSDDPLALLATFPDVLEGA
GVADKKGKAVKAEGDAAGSKRKRAPAKEKKEKDPNAPKRPPSAYIEYQNSVREEFRKQYS
DLPYSEVLKKIGSMWQSMTDAEKKSWQDITEQKKSQYMKAKELYESTGEGPAPATPAADK
KEPKKRKTKAAAAEPEDIPVEDVSNKKKKAASPAKKVESEVSLVLSSATPARLMERNSAV
PAGHQTHKISLLTERV