Protein Info for mRNA_8142 in Rhodosporidium toruloides IFO0880

Name: 16510
Annotation: K06910 K06910 uncharacterized protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 182 PF01161: PBP" amino acids 58 to 170 (113 residues), 73.5 bits, see alignment E=1.1e-24

Best Hits

Swiss-Prot: 36% identical to D1_ONCVO: Protein D1 (Fragment) (D1) from Onchocerca volvulus

KEGG orthology group: None (inferred from 40% identity to dya:Dyak_GE10210)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (182 amino acids)

>mRNA_8142 K06910 K06910 uncharacterized protein (Rhodosporidium toruloides IFO0880)
MAADTHSSSIVEGVREALEKGGLLGSSLIPNSFTPKVTIHATYPSSGNVVIGSTYAIDQT
QDEPTVSFNAPPGKESKFTVVLADPDAPSREDPKWAPFRHWVLADVVPGKAAGTTVATYM
GPAPPQGTGSHRYVFLLYAQPWDHTPTLPNDSDDRPSFDVGKFAKDNELDLIGATFFYAE
KK