Protein Info for mRNA_8144 in Rhodosporidium toruloides IFO0880

Name: 16512
Annotation: HMMPfam-Domain of unknown function (DUF3506)-PF12014,HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 716 PF12937: F-box-like" amino acids 17 to 59 (43 residues), 37 bits, see alignment 4e-13 PF00646: F-box" amino acids 18 to 56 (39 residues), 21.2 bits, see alignment 3.2e-08 PF12014: DUF3506" amino acids 519 to 666 (148 residues), 46.6 bits, see alignment E=5.4e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (716 amino acids)

>mRNA_8144 HMMPfam-Domain of unknown function (DUF3506)-PF12014,HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383 (Rhodosporidium toruloides IFO0880)
MDAEMAAGDSQPASLVTLPPELLLRTFSLLDPQSLVRLSATCTILHAVARSETLWRGIVQ
AVVREHHIGDAGDEVGSSTSEDDGSTWFMAASFLLPYGQNLGYFASSISFISRISRVGIR
SSPHASADRPPRYTIAATQMIPRNRYSSATPPPPNFLPFGAVRPRPEQSLLFISPQVNPS
HPYAGASMELLEPTYDFGSQTFEITPEEGPCLSTTRPRAEAALAGQAPPRPSPVRLRLAV
EPVRRKVEHPSASSADLPGGENDQPWDPAARVGLHREALFALFSGRLPDRPWPTAQLVGL
EELNTADLLVYRAGRTDPPRHIIKLGDGAFRGLKDWLTSPDGAELPLAEVVQPADEASGE
DDEAFVTGFRIRAKRTPKLPPTGDQARGETSSGAGTSELWSNGTATTRRRGVGANGGMAV
LWHGREQDPEENRRPITILRAGDEAEGGFVLRLPGSPPQPVSPTLPSADDAGASASTDDQ
LADAVDASSEAFFPIKAPARPLTWIDESHADDHGDITAASLEGLWVGTYSAHGLEFIYLT
VGIAEFPRQGDADSSDSEEEYAPAPSYHHVIQATKVTGDANVPSGQPSWIAILPPTSADI
LLDSSARAIVPTISSTKFRHLSSLDPSSPAYTSLNSGLGPDWDEGVVQGYGRLALTGYTS
PSWSPARVRFFKSETRIPPPPELAETAREKVVESVEEIQIHWLELSAVSAFRRVRI