Protein Info for mRNA_8158 in Rhodosporidium toruloides IFO0880

Name: 16526
Annotation: K14004 SEC13 protein transport protein SEC13

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 336 PF00400: WD40" amino acids 12 to 43 (32 residues), 16.6 bits, see alignment 1.2e-06 amino acids 52 to 90 (39 residues), 21.3 bits, see alignment 3.9e-08 amino acids 221 to 258 (38 residues), 20.6 bits, see alignment 6.5e-08 amino acids 293 to 321 (29 residues), 14.5 bits, see alignment (E = 5.5e-06)

Best Hits

Predicted SEED Role

"High-affnity carbon uptake protein Hat/HatR" in subsystem CO2 uptake, carboxysome or Carboxysome

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (336 amino acids)

>mRNA_8158 K14004 SEC13 protein transport protein SEC13 (Rhodosporidium toruloides IFO0880)
MTVPPTSVQVETGHQDMIHDAQLDYYGRKLATASSDRTIRIFDVEQDESYRLVDSLQGHD
GPVHALAWAHPSFGSILASCSFDGKVFIWKENDGPQKGWSKVKEHLLHTASVNAIAWAPH
ELGPILACASSDGKVSVLTFNNDGTWEASLFPAHSLGVTSVSWAPGVGIGALTNPQAGAG
ADGQEALQVVKRFATGGCDGMVKIWAWNEQTKEWAPDPIEHVLSGHTDWIRDVAWAPSVG
VGKAYLASAGQDKTVFIWTQSDARSAWSKVALEPAPQQQQGQGQQQQADGKFPDAVWRVS
WSVAGNVLAVSSGDGKVSLWKENLKGKFEEVSQLAS