Protein Info for mRNA_8162 in Rhodosporidium toruloides IFO0880

Name: 16530
Annotation: K01288 KEX1 carboxypeptidase D

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 675 transmembrane" amino acids 546 to 565 (20 residues), see Phobius details PF00450: Peptidase_S10" amino acids 76 to 470 (395 residues), 329.9 bits, see alignment E=1.8e-102

Best Hits

Predicted SEED Role

"Sinapoylglucose--sinapoylglucose O-sinapoyltransferase (EC 2.3.1.103)" (EC 2.3.1.103)

MetaCyc Pathways

Isozymes

Compare fitness of predicted isozymes for: 2.3.1.103

Use Curated BLAST to search for 2.3.1.103

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (675 amino acids)

>mRNA_8162 K01288 KEX1 carboxypeptidase D (Rhodosporidium toruloides IFO0880)
MVRVSPDGTAVASELSGTPHDVPARRPAKRQRTSSLPTASDFWIDSLPGFHGDFRLSLYG
GNLPSATHTTPPAPAADSDAHLYFLLARNKHIPKRERLVIWLNGGPGCSSFDGALIELGP
LRIDESGTPRVVEGTAWNEYANVLFLDQPAGTGFSYVTKNDNVRELADAADQVVNFLANF
YRVFPEFSSMDTYIAGESYAGQYIPYIADAIEKTTIVNTPLKGLLIGNGWISPREQYPAY
LDYLLDQRLVKENSQAHRNIRRVLDKCEEKLATIEKDNGGKGMVLVGECEQILGAVGAAT
GKDGLCLNLYDTREYHACGTEWPPALKQVSGFLRSRNVVKALHAEKGPESHGPWTQCSSS
VGAKFWTPNSVPSVVLLPQLLEKMPILLYNGDKDAMCPGIGIEKMIDKLEWNGATGFVHA
APLDWSVDGESAGRWTTARNLTYVEVFNSSHMVPMDKPLAAHDMLLRFMQVDTLHSAGSA
AKIPSRIGSSPEAVLAPTHPNGTALVPPSVLDTTLDGVEADGSAEKVIEDGYDVEHERQF
GPRRTAALVVFLLLIVGALWGIVHWRKAARRERYRKSKGKGRASVPLDERRQQRESKRGH
RRDEGAYHDDRPEPTPDEAPETVAVFDIGEEDEYDEEERRVGRRYEDDEDEDGKGDLGKA
AEDANPWRVDSARRY