Protein Info for mRNA_8166 in Rhodosporidium toruloides IFO0880

Name: 16534
Annotation: BLAST receptor-activated Ca2+-permeable cation channel [Aur...

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 964 transmembrane" amino acids 267 to 286 (20 residues), see Phobius details amino acids 300 to 317 (18 residues), see Phobius details amino acids 329 to 352 (24 residues), see Phobius details amino acids 369 to 392 (24 residues), see Phobius details amino acids 400 to 422 (23 residues), see Phobius details amino acids 428 to 448 (21 residues), see Phobius details amino acids 460 to 485 (26 residues), see Phobius details amino acids 550 to 569 (20 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (964 amino acids)

>mRNA_8166 BLAST receptor-activated Ca2+-permeable cation channel [Aur... (Rhodosporidium toruloides IFO0880)
MATERTALLSPDSTVRGASHAEPHSDCDGFLGPGADRMEQLASCDVFGNAHWLIKRIRRD
VDVAVSESQFFTPEFHFTTMRPLEADLADRCDPSIVYVLLLCRLQFIRERDSALASSSIN
ETRARLCEIMAVKLLRHQAALAKGPNQGLLAMARALVGGFHAFQGASEEVVERIREREGY
SSRVAAQGASKTNALELAILGKARHFIKSQTCQRVINAIYDGRITYTSSSFIDFLGDRYK
TREVSLYEVHKAPVLDHYRLRVPKYRAVIEFCTFIVLFVSFLLVILDRHSRYDGTPVSKL
SWMELWFFFYSIGYTLDKITSIAEHGWSVYAAGLTNGLDAVSLPIYCAAFVLRAHSVYTN
DARISERSYAILSLAACLLFPRLAFTAISNNLLILSLRAMLLDFFFLMSITVFCFIGFVF
ALNHLSEGAYSVMRISEWLVFIFFGLDGSGIDESPKFDHVLGPILFVSFAALSNTLLTSV
LVAILSTTYANIANDAAAEDMFRKAVGCFEGVKGNSLFDCASNVPPLNLIALCGMWPLSR
VLSPRWFHKVNVFATRTLSLPILLIIALYERQSAGGSYFLDWWGDVKVAITARLPRKWAE
KLSLLEGAHWECEAIFEYTPSGDEKSSSEEGFDEDESFGGPDDVEEAVLEAGHGGGKRIS
SRASTALDPAKVYALQQEMLAEAQREAQTGQPRASALVTGTPTTSAPVPLSRQASFAGVS
ETSTIRVKPNRLPSARYSGLLPSSPEEPSTSSGATATAFPPMPPQTGADSRTGRVSASPP
ASPRTHFAALPSRPQPVAAPSGGTGRELRRFHTVDERLPANATGTRHRRRRSSVASDYGA
ISRIDLSSSAPTKESPLARLYSLRQADDPFNSGGPRVGGIGRRLSMGPHSNGARGDGASA
RTTAWLAATAASLDKSDEPTPGEMMALIQSLVSTVSRLEQKLDDERGKRREASPGDEADV
EEED