Protein Info for mRNA_8168 in Rhodosporidium toruloides IFO0880

Name: 16536
Annotation: BLAST PQ-loop-domain-containing protein [Dichomitus squ...

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 352 transmembrane" amino acids 45 to 66 (22 residues), see Phobius details amino acids 112 to 132 (21 residues), see Phobius details amino acids 151 to 169 (19 residues), see Phobius details amino acids 191 to 210 (20 residues), see Phobius details amino acids 222 to 241 (20 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (352 amino acids)

>mRNA_8168 BLAST PQ-loop-domain-containing protein [Dichomitus squ... (Rhodosporidium toruloides IFO0880)
MDTSHHHERGEITRVRLASLPLHLPLRRLCEPPRRHSRQAPPTQLALGIWYVTTDCVLLV
QLSFFGHLDPFAPDPRPTMVFAKLRQRKRRHPRWYRITLAFMSYSLWDDVKLLLFCIAAG
LAAGGIYLTLGLYHDPEHFAIEVPHALDLKSFIMGLIAQATVCLARIPELRSGESRSKAG
FEPAHAVDDPLFWFLIAENSFNLLSIVPLSTNAQYLLVQSPWIGGGALMILLDCVLISRI
RVWQKRWKERKGADGKTGAEKEAERVARFAKLDEEKAELEEEWEVEDMHNDAHGPVPKQK
AGESRRDYERRVHAHAVARKDYLENQYLVADVKERGERRGKSCASYSAPETS