Protein Info for mRNA_8170 in Rhodosporidium toruloides IFO0880

Name: 16538
Annotation: BLAST PQ-loop-domain-containing protein [Calocera cornea HH...

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 444 transmembrane" amino acids 15 to 34 (20 residues), see Phobius details amino acids 46 to 65 (20 residues), see Phobius details amino acids 72 to 92 (21 residues), see Phobius details amino acids 139 to 158 (20 residues), see Phobius details amino acids 179 to 196 (18 residues), see Phobius details amino acids 218 to 236 (19 residues), see Phobius details amino acids 242 to 260 (19 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (444 amino acids)

>mRNA_8170 BLAST PQ-loop-domain-containing protein [Calocera cornea HH... (Rhodosporidium toruloides IFO0880)
MAVQELTLRMIVSSLFGWLALSTTCAAFVPVVVMNAARMRVSSSPGFLWTWLFGDITNLL
GAVLGKLPPTQLALAIWYTAVDVTMIIQLRFFGHLDPLAPDPKPTKVFVKLQERKKKHPR
WYKITVAFMSFSAWDDIKLLLFCIAAGLAAGGIYLTLGLHNDPEHFVIEEPRVLDPKSLA
FGIVSAATFCIARFPEMRSGENRSKAGIKPQHELDDPLFFNIVSILILSTNGQYLLIQSP
WLGGSALSIVLDGVLIWRIAAWQKRWNERKGADGETGAARDTERAARLAKLDEEKAQLEE
EWEVEDMHVEAHAPVPTQRDGESKTDYKRRVHAHAVARKDYLENQHLVADIKARGDHRAG
RHSKREKDDEKDDYASGGPQDSDSQNFDTFGSSTHHRGRFSNGRDLSRVESDGGDSALGH
LPLLLSSNGGGGRKRRSVGSVKRV