Protein Info for mRNA_8176 in Rhodosporidium toruloides IFO0880

Name: 16544
Annotation: Interpro DNA replication regulator SLD3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 614 transmembrane" amino acids 201 to 220 (20 residues), see Phobius details PF08639: SLD3" amino acids 84 to 480 (397 residues), 28 bits, see alignment E=5e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (614 amino acids)

>mRNA_8176 Interpro DNA replication regulator SLD3 (Rhodosporidium toruloides IFO0880)
MATQTTTTKRRLIYSLPCRPPIPFPAQPSYPIHVPKRDIKQAYTDALWPPADESQSEQAI
LEAFARSLLALLADRSAAGFDSLARELVLPLQEFDRRWRDHVPGAIEASEEDEEDSSEGL
GEEEARRAREDYARWAVKEKARLEEERRKAEEKRRKGKQRAADQDGAAEQMDEDEDEAAP
KEIVVRSDDWLSEKELLETRLQSLLLLTLLSLPSIYTPSLPRKGKKKKHPELFRDTLDPA
MLLDFLTDRMQIWRVMRDVGGFGIAGEREREKEGEGREEVVVEEKDAVQVWWSDIVEPLF
RTRVDSPILSHHRLKLFPSSATQAARLAQRLEPAPSPFKARSLLSLEKSARKREMREDER
RVAQSPTMKRLMGLKGLGGKQKEKEAGGEEEDVFKVPGVPLKRKDSAEAPADPAPRPRLP
RKQERPRPLPRGDNMAGVPDVLKRRVVSLSKKPSASSVAVKNKVARKADADGQHGLKRTR
KAVSPKKSTAADRAAHSLTLVPDTPSKSSSSSSSSASFRKPFSRATSMPSFAALGAAFRA
GAADAPRLPIPFEVPSPPPFGVKRTKGARALELDEEAEEVAYESDEEMESAAGLRDGLST
PKKQVVAQVLVPDT