Protein Info for mRNA_8179 in Rhodosporidium toruloides IFO0880

Name: 16547
Annotation: K20705 DNMBP, ARHGEF36, TUBA dynamin-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1260 PF00621: RhoGEF" amino acids 423 to 674 (252 residues), 109 bits, see alignment E=3.6e-35 PF03114: BAR" amino acids 707 to 912 (206 residues), 31.7 bits, see alignment E=1.3e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1260 amino acids)

>mRNA_8179 K20705 DNMBP, ARHGEF36, TUBA dynamin-binding protein (Rhodosporidium toruloides IFO0880)
MNGPSLATDRSVPRSAPANRNTHRFFDDTSSSDEDRHGRPRSGLLPGSAVANYFNLDFSF
LDEEPPPRTTSAYGALRRSSVDIRRKPAGREEDYFSLSRMSDALPASKRDSVGSSISLRQ
PGSSLPFPSRPKNPRRISTESAMTRRSSVHSPGEHSEYLSSHLSSSVDGRRPSMASILSG
NSYTSTGSSYGYGSRLSPASPTFPPIAEGGPDTAEKRKRLAAFLDETASAMEGGKSLTMV
LPESRPTAPQPKTLSELAEECASPGRSSSRSSDRVEYRHPFDGRPASAAPALEVSQSPTS
RDTASLPDQGSSAEQPPRAGSAQDRDTVYFTPKAGQSADEHEAEEAPGSISSQAATSTGL
GLASVDLRTPSTRSISEHSPSTVRAGSPAFEAAPEPATQTTPSTEISVETERKLRNFEKR
RRIIQELVETETTYAVDMAVVRDIYLARARGAHMAQIADHVMSTGLGLAKASSASPPSPS
LAPRRASHRPDVNRRVSSAPSLTGRNELRRATVAAMPNLMPGQPLMSPKDLHIVFANLEE
IAALAEGFANLLDSASGGEDPDAMDDRIGEVFVEMIPRIQQVYSNYCVRHHRAIIRLQEL
EPTLRTYLSECKTLSHGRTNAWDLASLLIKPVQRCLKYPLLLDQILALTPDDHPDRVSLQ
RANTDVLMVAEHINEYKKRNDAVARVVAKDKSSQRRDSSRSISSTVTKKLLRSSQKAKTA
LGFAENGGDEMFDTLVALVDSTRSGVLRFSNEMRDWTKSTKTALEAQVGMVEGWINMYAP
MAGERHSPASISHRRLCIFLDEVLIPIIEGPWRELDYEVRHSLILKTDHLLSLFENPRQV
IAKRNDKMLDHSRYLAKKLPADRRGSEEFLLLSSQLLEELPRFLGSVSRYFNIIVGHFAG
AQAAYHETVQERWVAFAEQWLVQVPDGSYEDIEASFDAAHQPLAQMMETLAAGLGIPASQ
STASSPLGHQRFSRISQASGPPSVPSPSRPYASQPTTPDEPRHSKRRSYLSSTTEYSSEH
LSRGSLGSTYRSSVTSDSSAPSLRPSSADDSGSSKTTEPVTPPPLPQHYVVVKNSEGRLS
KVIHEPLNGYDRRSMALRYDAPLPPAPSVQPTSSSPSASANRKYDSSAQSSDSSVARPRE
TAGRTAQELRERYLSTYSVYLPADEGDDEDDFGADGPLYVAEAVNACRSSGYRSGYPIWS
LEVGDRLMVELEEADSAEGGAGWLLCRKDGVGKLGWARTEDLVMIETTEEEEGSSSSQSV