Protein Info for mRNA_8180 in Rhodosporidium toruloides IFO0880

Name: 16548
Annotation: K13127 RNF113A, CWC24 RING finger protein 113A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 371 PF00642: zf-CCCH" amino acids 166 to 191 (26 residues), 35.6 bits, see alignment (E = 3.4e-13)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (371 amino acids)

>mRNA_8180 K13127 RNF113A, CWC24 RING finger protein 113A (Rhodosporidium toruloides IFO0880)
MSSDAPVTFIKKRKGPPAGLRKKEVDTASSSADSKPAASEVVQAAKRQVTSHLVQGTGGY
KRRKLQDAALQAQDDSDEEEDKERKAFAVRHSTERRAEGRRSESPPAWVSSEQAKEMARD
KNAKAEEVPDDGLYRGANKQKNQLPKAVGPVKGGPSNVRTITLVDYQPDVCKDYKETGFC
GYGDTCKFLHDRGDYLHGWQLDNSFLSNSAAAGSFLAKQRARDGDKDDSDSDSDDELPFA
CLICRKPFGPEPVVTLCGHYFDSACAIKRFAKTGKCFACGASTNGVFNRAIKLIAKQKER
EALNAQAREEEEGEGGGAGDGIEIEGLTDGGRADDSHDASRRRGAEASEEEEEEDEEEEE
RPRRRPIIEYN