Protein Info for mRNA_8190 in Rhodosporidium toruloides IFO0880

Name: 16558
Annotation: KOG2757 Mannose-6-phosphate isomerase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 928 PF01238: PMI_typeI" amino acids 471 to 891 (421 residues), 204.6 bits, see alignment E=1.5e-64 TIGR00218: mannose-6-phosphate isomerase, class I" amino acids 511 to 913 (403 residues), 167.4 bits, see alignment E=2.6e-53

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (928 amino acids)

>mRNA_8190 KOG2757 Mannose-6-phosphate isomerase (Rhodosporidium toruloides IFO0880)
MDSPDKSLYTPVSLADTLSGPQRTYRSAATSRLPSSNSASSGFTTTVSAKDRSQAAKKEA
AAMCEVLGLSGGGGADVEATPKPGRSLNSARTADREARGPSVEVVSLRSTLEGKEQEIAA
MRKELAALTREKRDLLAKVERLEKAAASDKAGLDVKQMERLEKEFEVQEQMLAGFQKENE
KQALEVERLKTRQRRMGEFLERAYGPHWQDELGLAERSGVASASPAVRGKLAARASLLGP
PSGLGALSRSTSFSTSLAQSAIPESPTDEEPPSSFAAASPMVPTSSFPIATAASPTAAPS
TSPAPALDSSALSQHLDSVQALLRSMEARLVARDVELAAVEKRAKEERARAHEKAEELER
QVRDAQGTLPIGVAFLRHAFISRIDLLTPESSTRPRRCEVRHFVAFASAASSALAVLSPS
PHDSNDCFRLLVTTHLSACSPSDIRPSQLARNATLASATMASSSQLPSVVQLKPFLQPFP
YGREGMDSWAAQYALATPSLKAGVEKDGGIKKSQPYGEIWLGSTHQNGPCQIEGKGGESL
KDLIQKDPRFYLGEKLLHNEQMSSQYPNDLPYLFKVLSFDKPLPLQCHPDKTLGGKLMDE
EKRKLGKNSDFVDSNAKPEVGVALSPFTAFVGFRPPEQLASILRGTPELQQMFKDSTLDS
FYQVASSSLSDDQAKAALRSLFYEAINLPTSKVKSIVQALQARFKKDSADVVFSAANEFT
PQGEANASGETEATAMKRVFEIGLKTYGEEDVGVLASLALMNILRLRAGEGAWILADDLH
AYVEGDIIECMANSDNMVAHGLGTSEQGGISTFVEMLSYRHLPAEKLLVSHDDVWSKAEN
GYARLYNVPIAEFDLLAIFLSTGRNFERLSPLDGPLCFVVTQGEVTVTAGHDSVTLTKGQ
AGFVRAGVEVKFTREGEAPTQVWGAFYQ