Protein Info for mRNA_8216 in Rhodosporidium toruloides IFO0880

Name: 16584
Annotation: K14376 PAP poly(A) polymerase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 703 transmembrane" amino acids 221 to 240 (20 residues), see Phobius details PF04928: PAP_central" amino acids 7 to 261 (255 residues), 220.3 bits, see alignment E=3.2e-69 amino acids 274 to 370 (97 residues), 130.3 bits, see alignment E=9.6e-42 PF01909: NTP_transf_2" amino acids 75 to 160 (86 residues), 46.1 bits, see alignment E=7.8e-16 PF04926: PAP_RNA-bind" amino acids 372 to 539 (168 residues), 175.3 bits, see alignment E=1.3e-55

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (703 amino acids)

>mRNA_8216 K14376 PAP poly(A) polymerase (Rhodosporidium toruloides IFO0880)
MAGQFLGVTPPISVAPPTARDLEVSKTLIQELKDRGIYESAEEGRNREMVLGRLNKLVKE
FVYRSSINHGLSDAKAREAGGKIFTFGSYRLGVHGPGSDIDTLLVVPRHVEREEFFSLFE
QMLKETEGVLEVTGVPEAFVPIIKCTFSGIDIDLLFARLAVPTVPDDLDLKDDNLLRNID
DRCLRSLNGSRVTDEMLRLVPDVPVFREALRTIKLWAQQRAIYGNVMGFCGGVAWAMLVA
RICQLYPKGCVGSIISRCVMCFQLRHVRSSPTGSLRRFFIIMHQWQWPAPVLLKPIEEGP
LQVRVWNPKLYPSDRSHRMPIITPAYPSMCSTHNVTLSTQQIMTAEFKRAADIVDKVFVG
SAKWSELFQPHDFFSKYRYYLQITASSGSADVQLKWSGTVESRIRQLVMKLEYVDTLLLA
HPFVKSFDRVNYCINEEEQRAVSIGEVPAAVDKRTEQDLIAGQGGTVYTTTFYIGLQIER
KPAGDKGPRKLDISYPTNEFTKLVKMWDSYDPDSMGVIVRYIKSTALPAYVHAGREPEPP
KTGGVKRAKTKKANGSNAATAASPALANAATDDSDAEHLNKKHRASSFVPENATPTPAGL
PPVPVENGPIPTPLEKTREAAEVAIGATPTGETPGAAAMNPPPTAASAAPSQPSVTLPGL
NSTLPVGELNGLASAVTNGGPQNEAALMAGETPAPVAASTAPA