Protein Info for mRNA_8217 in Rhodosporidium toruloides IFO0880

Name: 16585
Annotation: KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1596 transmembrane" amino acids 610 to 627 (18 residues), see Phobius details amino acids 637 to 658 (22 residues), see Phobius details amino acids 664 to 684 (21 residues), see Phobius details amino acids 709 to 718 (10 residues), see Phobius details amino acids 723 to 741 (19 residues), see Phobius details amino acids 747 to 769 (23 residues), see Phobius details amino acids 780 to 799 (20 residues), see Phobius details amino acids 805 to 824 (20 residues), see Phobius details amino acids 893 to 911 (19 residues), see Phobius details amino acids 1306 to 1325 (20 residues), see Phobius details amino acids 1336 to 1358 (23 residues), see Phobius details amino acids 1378 to 1403 (26 residues), see Phobius details amino acids 1415 to 1436 (22 residues), see Phobius details amino acids 1442 to 1464 (23 residues), see Phobius details amino acids 1475 to 1492 (18 residues), see Phobius details amino acids 1568 to 1590 (23 residues), see Phobius details PF14510: ABC_trans_N" amino acids 183 to 262 (80 residues), 43.7 bits, see alignment 7.3e-15 PF00005: ABC_tran" amino acids 294 to 450 (157 residues), 57.4 bits, see alignment E=5e-19 amino acids 988 to 1137 (150 residues), 54.7 bits, see alignment E=3.4e-18 PF01061: ABC2_membrane" amino acids 618 to 827 (210 residues), 133.2 bits, see alignment E=1.8e-42 amino acids 1284 to 1495 (212 residues), 151.3 bits, see alignment E=5.3e-48 PF06422: PDR_CDR" amino acids 850 to 935 (86 residues), 72.6 bits, see alignment 4e-24

Best Hits

KEGG orthology group: None (inferred from 60% identity to cne:CNA07090)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1596 amino acids)

>mRNA_8217 KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily (Rhodosporidium toruloides IFO0880)
MAVSLSERGVSSEAQPNLLIKPTQPLESFLTLSPHGLVARRTLNPRSSGLRLVAASLLAP
ESPATACETARRRHALGGSLQPRPPPPLRPAKTPLHYRSPTLPPSLSSSIDSTLTMQTHA
PIGGVATGGVVPSHDQIELEQRHDGRPDDRASTETLANGNDTAAEQKGESVNVKRAESQF
EDLRRELSRSSSLHRVRTGQKDVEKEGSESSEDFDLLAYLRNEADQYDAAGFKRKVVGVS
WDKLRVTGNGGIKMHIRTFPDAIMEAVMWPVIKFMKTTKTGWFKPSPKDLLREFDGCLKP
GEMCLVLGRPGSGCTTFLKTIANSRLGYLSVEGDVSYGGIPASEMAKRYRGEVVYNQEDD
VHAATLTVAQTLMFALRVKTPGKLLPGQTKKSFNKEVMDLLLRMLGIPHTKNTKVGSAFV
RGVSGGERKRVSIAEMMATRASVCSWDNSTRGLDASTALDYAKALRILTDVHQMATFVSL
YQAGEGIYDQFDKVLVIDAGRQVYFGPAKEARAYMMSLGYADLPRQTTADYLTGCTDPNE
RQLAPGRSAADVPSTSEQLEEAFKRSEIYSRMIAERDEFRSRCESDDQARNDFREAVEKG
KRRGVGRKSPYTASFFAQVWALVIRQFQLKAQDKVDLAVSWTTAIIVALITGAVYFQMPE
TASGAFTRGGLIFIALLFNSFQAFNELPTQMMGRAIIHKHKTFAFYRPSAAALAATIADA
PNNMIQILVFDVIVYFMGGLFRSGGAFFSFYITVIGGFFALAGFFRLLGTLCQNYDQASR
LASVIITFMITYSGYLIPTFAQQRWLFWISYINPLQFAFSAAMANEFKRINLNCDVSYIT
PHNVNGQLTQYPDTLGPNQVCTLPGSSPGNPIVPGSAYISASFDYNVADQWRNWGITIAF
FVGFTLIQSYLAERLDHGAGAPAINVFAKENKERKKLNEDLEKNKEAYRKGEVEQDLSDL
IQTRKPFTWEDLTYTVPVPGGQRQLLDHVFGYVRPGQLTALMGSSGAGKTTLLDVLANRK
TIGVIGGERLIAGRTPGKEFQRGTAYVEQLDVHEPTATVREALRFSAYLRQPGHIPKAEK
DAYVEQVIQLLELEDKADAMIGFSGFGLDVEARKRVTIGVELASKPQLLLFLDEPTSGLD
GQSAYNIVRFLRKLAAAGQAILVTIHQPNAMLFENFDRLLLLKAGGRTVYFGDIGKDSHV
LREYLARNGAICPDNANPAEYMLEAIGAGSGRQVGNKDWADIWNDSEEFQVVKREIEDLK
RDGLAMPEDTDPSLKKEYSTPFWTQFQVVISRTFLSFWRSPDYVFTRLFNHISIALVVGL
TFLNLSASSASMQYRVFVCFFVTVLPAIIMSSIEPTFILARMTYVREASSKMYSPVVFAL
SQLAAETPYSVLCSIVFFLLIYYPPGFNMDSNRAGYAFAMILLTEMFSVTMGQAVAALAP
SIYAAGAVNPFLLVVFSLFCGVTVPRPNMPGFFRAWLYWLDPLTWLIAGLVTNELHDLRV
TCLDSEYRIVQPPSGQTCSAWLQPFVSAAGGYLANPDATSNCQYCQYSVGDQFFEPLGLS
FSDRGRDLGIFLCYSVFNCFLTVLGATFLTKIYNKR