Protein Info for mRNA_8218 in Rhodosporidium toruloides IFO0880

Name: 16586
Annotation: K02905 RP-L29e, RPL29 large subunit ribosomal protein L29e

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 64 PF01779: Ribosomal_L29e" amino acids 3 to 42 (40 residues), 82.1 bits, see alignment E=1.4e-27

Best Hits

Swiss-Prot: 80% identical to RL29_YEAST: 60S ribosomal protein L29 (RPL29) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

KEGG orthology group: K02905, large subunit ribosomal protein L29e (inferred from 78% identity to pgu:PGUG_02332)

Predicted SEED Role

"LSU ribosomal protein L29e"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (64 amino acids)

>mRNA_8218 K02905 RP-L29e, RPL29 large subunit ribosomal protein L29e (Rhodosporidium toruloides IFO0880)
MAKSKNHTNHNQNKKAHRNGIKKPKTNKYPSMKGVDPKFRRNARYAAQGTQKALAAARKE
AASA