Protein Info for mRNA_8221 in Rhodosporidium toruloides IFO0880

Name: 16589
Annotation: KOG3140 Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 292 transmembrane" amino acids 34 to 54 (21 residues), see Phobius details amino acids 74 to 97 (24 residues), see Phobius details amino acids 103 to 125 (23 residues), see Phobius details amino acids 144 to 164 (21 residues), see Phobius details amino acids 182 to 203 (22 residues), see Phobius details amino acids 224 to 245 (22 residues), see Phobius details PF09335: SNARE_assoc" amino acids 95 to 204 (110 residues), 52.3 bits, see alignment E=4e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (292 amino acids)

>mRNA_8221 KOG3140 Predicted membrane protein (Rhodosporidium toruloides IFO0880)
MTDCRSTVSLWRRARDIGEKAVERYHRLGWKGKLVFWLWIGLYLFAGIIALVIGPNKVFA
WFASLADKIRSLSFAWAIFVALSFPPMIGFGTAQTLVGFALSLWPGFLVAAASCLLGSAL
AFLVCRRLIRLFASSISRFPAFQALSQAVTSKGLLLIVLLRLCPLPFSYSNASFASIEAV
SLPQFMLGTCVLLPKVFLYVFIGDRMYKFADPESRGEMDTLSKWLNATSIGVSAIVAVGA
SYYVYKADLKASRVSTVADGNSGGAAPQASTSEEEWGESDSSHEGATRDTHP