Protein Info for mRNA_8222 in Rhodosporidium toruloides IFO0880

Name: 16590
Annotation: KOG3140 Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 553 transmembrane" amino acids 201 to 221 (21 residues), see Phobius details amino acids 241 to 262 (22 residues), see Phobius details amino acids 270 to 295 (26 residues), see Phobius details amino acids 344 to 366 (23 residues), see Phobius details amino acids 387 to 408 (22 residues), see Phobius details PF09335: SNARE_assoc" amino acids 266 to 361 (96 residues), 43 bits, see alignment E=3.1e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (553 amino acids)

>mRNA_8222 KOG3140 Predicted membrane protein (Rhodosporidium toruloides IFO0880)
MALTQAKLPAPLRLAATRQTPLSHREAHSQLRAFLSSDASSLLSGSGAVSRAALVRLVQG
LADELDAPRPAAAAQEEDEVKADSADEDKKKQKKRRKSDKGGAEGSEKKKRRKFEEEDRD
LVTTTPVGERQERDQPPSRSVPGHCTFASPSGNAPSASPPPRHLDPTSRWMDYARQALAR
SVEFSEKAVERYRKLGWKGKAMVWAWAGLHVLFGGLFWLIGPERIFAWFASLADDVRELP
HGWLILSAIIVVTSVPPLIGYGTAQTLVGFAYGVTPGFYISAGSCLLGGAFAFVLCRKLV
TLFAPFIQRDKTFAALSRAVRVKGLPLITLLRLCPFPYPYSNLFFASVESVKFSEFMLAT
LHVFIGHRTYLFADPASRHKMDSTTRWINGIFMVGGTILGIATSWYLYRLTMRYVSETTD
IPEEDLEAGLLDDVDELLASAGGSAVPSDSEAGERVKEQRRMSTAEGRLVDDAEDDAVVR
KAAVVQPGRPSADNWDGPDGFFDFDERAEAGRTVAGVEANGHDRRESVAWGLDAELDLMG
DDEEQEQVKKRID