Protein Info for mRNA_8224 in Rhodosporidium toruloides IFO0880

Name: 16592
Annotation: K00948 PRPS, prsA ribose-phosphate pyrophosphokinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 375 PF13793: Pribosyltran_N" amino acids 7 to 176 (170 residues), 145.3 bits, see alignment E=1.2e-46 TIGR01251: ribose-phosphate diphosphokinase" amino acids 8 to 375 (368 residues), 351.4 bits, see alignment E=1.7e-109 PF00156: Pribosyltran" amino acids 213 to 314 (102 residues), 61.2 bits, see alignment E=1.4e-20 PF14572: Pribosyl_synth" amino acids 267 to 375 (109 residues), 90 bits, see alignment E=3.1e-29

Best Hits

Predicted SEED Role

"Ribose-phosphate pyrophosphokinase (EC 2.7.6.1)" in subsystem De Novo Purine Biosynthesis or Pentose phosphate pathway (EC 2.7.6.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.6.1

Use Curated BLAST to search for 2.7.6.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (375 amino acids)

>mRNA_8224 K00948 PRPS, prsA ribose-phosphate pyrophosphokinase (Rhodosporidium toruloides IFO0880)
MPNGSSIKLLTGNSHPELAQMVAQRLGIPLTPCTVKKFSDNETSVQIGESVREEDVFIIQ
TGFNPSPHPFGAKARHYGTDSDPEVTRPGTPLPPLANRNDLNSRPSSPSKPSPAPANDPN
DLLMELLIMISACKTASAKRITAVIPCFPYARMDRKDKSRSPITAKLVANMLQIAGCDHV
ITMDLHASQIQGFFQVPVDNLWTEPSMVRWVKENIDDWHNAIIVSPDAGGAKRATNLADR
LDCDFALINRNRSKGDGPDSEGKMELLVGDVKNKTAILIDDMADTGGTIKLATQTLVEKG
AKEVYALVSHGLLSGRSMEELAKMPLVKVVVSNTVCQTEHFKKAQGKLEVMDISPVLAES
IRRTHNGESISLLFK