Protein Info for mRNA_8230 in Rhodosporidium toruloides IFO0880

Name: 16598
Annotation: K09668 LARGE glycosyltransferase-like protein LARGE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 569 transmembrane" amino acids 22 to 42 (21 residues), see Phobius details PF13896: Glyco_transf_49" amino acids 241 to 308 (68 residues), 42.1 bits, see alignment E=3.9e-15 amino acids 311 to 516 (206 residues), 180.2 bits, see alignment E=3.5e-57

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (569 amino acids)

>mRNA_8230 K09668 LARGE glycosyltransferase-like protein LARGE (Rhodosporidium toruloides IFO0880)
MPRTRSTKPASGSSRLGRLAKSLVSLYLLAAVVYTAFQLVLAPTVSYLSGGAILRDDGDR
EAAFGTADPNALEVLAAGSASAPSKANGASATTTKLKHAALETAAVKAADIRNEDSSDPV
WAAAEAAAKKGKKKASTTYRPPAVILDSKELVEKRLHGFADVDWDKDHMVWHHPTAEAAH
SGPRADEAALAAYSKAPADGKTISEDEFLSLSFGSSLQPSKVIPYYYRASDPDRIDFNKE
DITITTLVTSNRFAVFERLVERYRGPMSATVHLTEGKAHSEMLRALETMYTSSPLMKQYV
DIHLVYDPFERQFNMWRNVAKFFARTEYVMMLDVDFWLCTDFRSRMLESPEVMQRLKGGM
AAFVVPAFEFHKQADGVDPNTFPSTKEGLLQLVNDDKIGMFHKSWAPGHGSTNYTRYYAA
KPGEVYRVQGYTHSYEPYVIFKKEGTPWCDERFIGYGGNKAACLFELYLSGVSFYVLPDD
FLIHQSHAYAEKARKHERKYNRKLYTDFREELCFRYLNLFLDQIESPRAKNLALECKKIK
GFASTAARYIAAAGGPSASKVKAKVKRTT