Protein Info for mRNA_8231 in Rhodosporidium toruloides IFO0880

Name: 16599
Annotation: KOG0927 Predicted transporter (ABC superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 570 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF00005: ABC_tran" amino acids 162 to 228 (67 residues), 25.5 bits, see alignment E=1.7e-09 amino acids 357 to 516 (160 residues), 73.3 bits, see alignment E=2.9e-24

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (570 amino acids)

>mRNA_8231 KOG0927 Predicted transporter (ABC superfamily) (Rhodosporidium toruloides IFO0880)
MLRRSASPFLRSLAPLPQVTASRTFTSSRLVRDAPPVFQAQRASVFPFGVPSNNPSQALF
NNLDFTIHDQDCWAILAPSSSSSTRAALLATIQHQARFHPISSASHPILATLPPVDRPAE
EGGPRERTVEDLLQFVSFKTRLGRSGAFDDYTARYYSIRDEDKLTVRQHLKDSTGASDDV
VADKAKDLQMTTLLDLPLITLSNGQTRRARILRALLAKPELLILEEPFTGLDASSRELLF
SLLSSLHSARSPRVLLVLRPQDVLPPFVTHIALADASPETPLRLGRKDEILATKEAQELL
AAGEAERAASKRRKEERQAAAAKKDEEASGRKTIVQLKGVNISYGRPAEGQEERKVLKDV
DWTIREGERWVLAGHNGSGKSTLLALLLGDHPRSFTEDIELFGKPRLSQATATLQANIGH
VSPEIFNAFPRRYGPEALSAYDVIVTGFESVYSYRKATPDQAAAISSLLSRFSHPLLTPS
FLDRPFASLSPGEQSLILLLRALVKRPPLLVLDEPFSGMDKATIEKVQRFIDEELEERQS
VVLITHFEEEVPKSIGRLLRLENGEVIERV