Protein Info for mRNA_8233 in Rhodosporidium toruloides IFO0880

Name: 16601
Annotation: K13113 UBL5, HUB1 ubiquitin-like protein 5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 73 PF00240: ubiquitin" amino acids 13 to 72 (60 residues), 27.6 bits, see alignment E=2e-10 PF14560: Ubiquitin_2" amino acids 18 to 71 (54 residues), 21.9 bits, see alignment E=2.1e-08

Best Hits

Swiss-Prot: 76% identical to UBL5_ARATH: Ubiquitin-like protein 5 (UBL5) from Arabidopsis thaliana

KEGG orthology group: K13113, ubiquitin-like protein 5 (inferred from 89% identity to scm:SCHCODRAFT_85593)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (73 amino acids)

>mRNA_8233 K13113 UBL5, HUB1 ubiquitin-like protein 5 (Rhodosporidium toruloides IFO0880)
MALIEVIANDRLGNKVRVKCDSDDTVGDLKKLIAAQTGTKAEKIVLKKWYTIYKDHITLR
DYEINDGMSLEMQ