Protein Info for mRNA_8242 in Rhodosporidium toruloides IFO0880

Name: 16610
Annotation: KOG3319 Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 230 transmembrane" amino acids 73 to 92 (20 residues), see Phobius details amino acids 99 to 119 (21 residues), see Phobius details amino acids 176 to 195 (20 residues), see Phobius details PF04061: ORMDL" amino acids 63 to 202 (140 residues), 171 bits, see alignment E=6.1e-55

Best Hits

Swiss-Prot: 48% identical to ORM2_YEAST: Protein ORM2 (ORM2) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

KEGG orthology group: None (inferred from 54% identity to scm:SCHCODRAFT_38060)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (230 amino acids)

>mRNA_8242 KOG3319 Predicted membrane protein (Rhodosporidium toruloides IFO0880)
MSNSPNTALLSLPPLRPSPSKSNSFTRSSQTTATRRGRSSSIVSVQEVPETYDDQLDQGA
LTNVNADWVNYKGAWLIHVVLIGLGIILLETIPGITQDLAWTIANLGYLFVSYIIFHYVT
GVPFDMTNNSGVYDNLTLWEQIDSGAQYTPAKKWLTTLPIVLFLVSTHYTRYDSHPALFT
LNLCALLFVGLAPKLPAFHRLRIKFFDAGDIGPTPDPSAPPTPKDEQHLR