Protein Info for mRNA_8243 in Rhodosporidium toruloides IFO0880

Name: 16611
Annotation: K08739 MLH3 DNA mismatch repair protein MLH3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 935 PF02518: HATPase_c" amino acids 38 to 101 (64 residues), 30.4 bits, see alignment 9.7e-11 PF13589: HATPase_c_3" amino acids 42 to 144 (103 residues), 33.9 bits, see alignment E=5.3e-12 PF01119: DNA_mis_repair" amino acids 353 to 398 (46 residues), 22 bits, see alignment 2.2e-08 PF08676: MutL_C" amino acids 695 to 877 (183 residues), 23 bits, see alignment E=1.2e-08

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (935 amino acids)

>mRNA_8243 K08739 MLH3 DNA mismatch repair protein MLH3 (Rhodosporidium toruloides IFO0880)
MAGPLLQEHPPPQEPPQLALLPPRTSSLIRSSTIVPTLPSILSELVQNSIDARATAIHCA
VDLDTWTVRVEDNGTGITQQDLALLRTAARHLTSKLNVTTNGTADEALAGVATYGFRGEA
LASLQDVGTLEIRTKTADDDEAHQLVLRGGECLAYGESRTERSTGTTVWVRDIFYKLPVR
RRALSKSSAQSTLLASLRSTLSTLSLIHPSTSFSLTDTTSSSATSSGESKTLLSVGRSGE
GLLGRWRQLWGRAGVEKVWEFNEAEQRGHAEEGGGEKMRARGFFSLSAAHTKAGQFIYVN
SRPLAAAQSPLHKLLNTLFASSSFSRHSSSHLSVPSSSVSSPLRARASPQKKSIERFPVF
VVLLEVPGRVVDVSFEPDKRVVEFEDPARIESFLTAITKRFLIENGFLHPAAPAKPPAPP
ATSPTKGKKRARTTGTEDGASVAAGPSTKSRKRVALTDETPAATTPPTRTRSAPSAIPPF
AHPSAATISIPSAEANEPLPMTGDDDASYKWTDPVTKQAWLIDGRTGNSKRCDECWPDGA
VGGEGRKQDAGKKGMVDRRWLKQVQEREDQTEEAEDVPNWLKSTLETWDNPVFPAAAPAG
RTIPSLPSLQTASSAVQPGQPLATLPATFRTTKPMLSNRLTATTLKQMNDFGRTTVSLDV
PTPTADLNPSSTPSLAPLEGGTQSFSRASLAQAEFIAQVDTKYLLVRVPASSEGPGATLV
LVDQHAASERVRVERFLDAIVGRVVRGEDVEVRELREEERVGVVVSRAEFEAVEHWRAVF
ERWGLRFAADATDAANEGAYHQLWLSTLPSLLSDRLSKDARLAQDLIRSYVGHLEEHGGG
VAGRAGREGESWTSGMKDVPPVLLELINSKACRGAIMFNDVLTPAQASTLLAQLAETSFP
FQCAHGRPSLVPIVNLPAASRSAGQGGGIDWSRFA