Protein Info for mRNA_8251 in Rhodosporidium toruloides IFO0880

Name: 16619
Annotation: HMMPfam-SacI homology domain-PF02383,ProSiteProfiles-Sac phosphatase domain profile.-PS50275

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 929 transmembrane" amino acids 138 to 154 (17 residues), see Phobius details PF02383: Syja_N" amino acids 138 to 461 (324 residues), 236.4 bits, see alignment E=2.6e-74

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (929 amino acids)

>mRNA_8251 HMMPfam-SacI homology domain-PF02383,ProSiteProfiles-Sac phosphatase domain profile.-PS50275 (Rhodosporidium toruloides IFO0880)
MESGQTGEEKERSVTEPDGETSSARSIVVEEEAALTRIRMPDKHVVLEKMALYQTQAYLY
LVASDKDEQRFRILKIDREFFKEAAARRAAGEAVDDSEMDLDIQEDGIVYSFAEKEDLLD
TLKARPSNNFKDLKQPCFGIAGFVRFACTIWMVVITARSKVGLLGGHFVFHSEGTELVEI
CRDKEAAAASIADDVRHKNAFTSVYLSRNFYFSHTYDISNTLQNNLLSGSSTIPRRDKWV
WNWHLLRPLRKPLPPDSPWIVPLIHGYYTQAKLTVFHRQVYIILIARRSRHFAGARFLRR
GVNSDGFVANEVETEQIVCEPLTTPFYSAAPSSHDHPNLAPSLPLPPHFPTTHQSRRLSP
RYTSHVQIRGSIPLYWTQDATKAIKPPIELALRDPFYTAAAKHFDGLFELYGGFCMALNL
IKQHDDRESLLVHEFRSCIDYLNQFLPDEHKIDYTAFDMSAAKAAASAVPGESESDAPRK
SVTDYIEDYAETSLDKTGFFHSGEGGGRVMPIVQHGVVRTNCIDCLDRTNAAQTIIGKTV
LGHQLHALGIISTPSLPAHSDAIRQLEAMYLEHGDTIAVQYGGSNTVNTIDSFRPSELAW
PAWSGGYSRDKVENMKRYYANSFGDYDKQAAIDLFLGIKPPLPPPAMWEYIPPPPRPSYR
DWYDPSHLSNPHASPHDIAAGLQATIDEEDAQDPLDLWRRFYRGVHFESLAPQFAFKMIS
TLKGPVMIRCVPFSLFSFIPPSSHARTCSQDDITVQASPLVPKMPRTYSRRPTTTSLRGL
LGSSVKSRRHMRNESSPPEAAQSAGDGDSASVSQKSTQTTTLPTAPFAASTGHLAAALLK
PVTRPDEAKEYDAWLSQFRHLSLAAQDHLSEKDRTMYEAHVGAVAGRRGTGGGVVGRPHD
VSEKDRAIFAAFAAAGQPRGASALVSAEG