Protein Info for mRNA_8259 in Rhodosporidium toruloides IFO0880

Name: 16627
Annotation: HMMPfam-DENN (AEX-3) domain-PF02141,ProSiteProfiles-DENN domain profile.-PS50211,SMART-Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN-SM00799

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1397 PF02141: DENN" amino acids 589 to 782 (194 residues), 32.2 bits, see alignment E=5.4e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1397 amino acids)

>mRNA_8259 HMMPfam-DENN (AEX-3) domain-PF02141,ProSiteProfiles-DENN domain profile.-PS50211,SMART-Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN-SM00799 (Rhodosporidium toruloides IFO0880)
MAHDEEEGEIEDGRNGMSQDSTTSPPQRSNGPLRRTSSFFRSLVNSTRPKPRRTRSSILL
SSSAISSPLPLDPPPKVAPIRTRASLVQVGDLAQMVEEQAGSGWSGTGTSYPSGSTSLRA
AATLTPERGVKRRRSLGNLLRRSPSRLSQHVEDEAVVADETSTPASSSRDVGVALTTDTP
SRHSGLNRRSLVSSVSTPQLRSRIASIASEAATESPASSSPQPPFRRVAHADQPPPRPPP
SVPLPPIPQIKTIAPTPGTTPASHKTGTGLRRRDTTPSVFQPLSYKAPPGLAADTPEPPS
PLRADSRTFFRSVISNGPAPPRPQRSPLRPTPSRSASPLPSASNAPHRPTTLAPPVSSAT
LPTSGSSPLRQRLSKLPSEEQRETEEKVPLASLYLVAGLSKDPQTWVRSRSQDGAGERRW
KAEVLGVLTGEEEKRDSGFKLVRLDRAEREKVTQKALKMSFRHDIEIVSSPTQPPATTSF
FSFTTSSSIAPQKQYHAVALKVWSQVESARAAAIASRLRRGGSAGAEAVKQAERTTKLGR
RLSHQLIEQMEGFEDTDGIEVPSSGFATETDGRDSASDGMAGERSESLWMPYSIILVSTF
PIHTLLSDVLRLSWALYHQDLAMHNAQMEVLLSSPAPRAGERIVVPISLEEEHEDTTFVA
VMPGQIDWATGSLRQLHLPIWPVFKALHLDNMLTIAELALAPFGKMAFVSRHDLLLDLSV
YVFQQILEGQGWKGLVQASAHVRDLTVYLDDSGPWLIGVPFSARALLADLAPDVAVVDLD
NNLVTCSEPPSGALSKSPARDKLLRTLEAAIGNIGRNFVPKEVVEAFSHGRFRPFSLVEF
AGQPREAERLLPDPAWQWSDTRALSAFPNTLSQTPRAGLVGRVLRLQSPRKSVSLDHQTL
RMQVLLRKNVEACVEQRDTLEADYGRANRKLAVLIQQSLEWQESFAVFKEFSERAALQVV
ELRDRLAAEHDTTAQLSGQLVQDRERRLRLEASLEAAEQARLDAITELSRISAMRCRVEE
QRALLSQEVRAVISGAEDETSPIYQAVAARIDSISHRSQTPSLSPRSTDQLLPPMDEQDT
QLTGRSDTPDVIAEGERIRQATQEVFRVISSRLSLALQAVGESTGADALAQSVASSVGTT
SPSRSAISDDATLVSSTSAPARPASPDIGPFSKPSPTSPSASPVLSFQPKPLHLTPPVTP
EVSDPNTPFSFVTIRPRHRRIASGFSSHGRQNSLGAASVLSSASSDASTRLATPISRSFT
SPTLNRSTPPFHKSTLSRSASSPLPMHEESDAEDDAQSFVSVSEGYTGLHASRAHTPASM
RTSNHFELEELADNVVKTPERRDGLAHSRQSSWSIDAPPVALFTRSESIRSLNKRWSFNT
EGRVRTAVEHIEQSSRP