Protein Info for mRNA_8267 in Rhodosporidium toruloides IFO0880

Name: 16635
Annotation: K01897 ACSL, fadD long-chain acyl-CoA synthetase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 630 transmembrane" amino acids 128 to 139 (12 residues), see Phobius details amino acids 274 to 291 (18 residues), see Phobius details amino acids 307 to 329 (23 residues), see Phobius details PF00501: AMP-binding" amino acids 118 to 511 (394 residues), 248.9 bits, see alignment E=7.8e-78 PF13193: AMP-binding_C" amino acids 520 to 605 (86 residues), 36.9 bits, see alignment E=6.1e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (630 amino acids)

>mRNA_8267 K01897 ACSL, fadD long-chain acyl-CoA synthetase (Rhodosporidium toruloides IFO0880)
MASLENTAVRFPSVVKPSPLPHSSNTAFEFLFSQPFRRGTETWKATPKDLQKHAMSEPIP
PEKTIFRDGKTGATLSYGRLYRDALTVASSLTDGVLSLRPAPLSASDPKVNRGAIISPVV
LLHLPNCLPFVTLAYGVLASGLTLTAANPVLTPQEIAHILTLSQPAAIVTTASGLSSFQQ
AFTLLTPELQAQLGYPTKGNVFLVNPDADDYGASALSLVQPVTNLGGWTVSDWKVLLPPN
PKPFTPPKYTGSEDALRAAMIFWSSGTSGKSKGVILTHRAIGSALIAVWHASTLGENERL
VGLPPFYHIFGWANVLMVGVAFGATVTTVSKFDPVTYLKIAQESRATHLHFSPPIAVLLA
KSPLVDGFNLSSVRGCTSGGAPLATSVIEQVYKRLGILIKIGYGLSETGGATQQQSMTWE
HLKSQLGSCGPAYPATELMIRSVETGKPVNVGEEGEVLIRSVCCTISYLNNPEATADSFT
EDGWFCTGDIGKLDPEGNLYITDRLKELIKVKGFQVSPAELEDSLCASPLVQDAGVTSVY
HQDHATEYPRAYVVPFDKEVLKGGKKADEFAHALRRHIEGKHAPYKWIRGGFVLVDAVPK
SPAGKILRRLLKDCKGHNVSVYEEKPRAKL