Protein Info for mRNA_8273 in Rhodosporidium toruloides IFO0880

Name: 16641
Annotation: K01866 YARS, tyrS tyrosyl-tRNA synthetase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 433 TIGR00234: tyrosine--tRNA ligase" amino acids 22 to 269 (248 residues), 167.2 bits, see alignment E=3.1e-53 PF00579: tRNA-synt_1b" amino acids 47 to 358 (312 residues), 201.3 bits, see alignment E=1.1e-63

Best Hits

KEGG orthology group: K01866, tyrosyl-tRNA synthetase [EC: 6.1.1.1] (inferred from 61% identity to lbc:LACBIDRAFT_252456)

Predicted SEED Role

"Tyrosyl-tRNA synthetase (EC 6.1.1.1)" (EC 6.1.1.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 6.1.1.1

Use Curated BLAST to search for 6.1.1.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (433 amino acids)

>mRNA_8273 K01866 YARS, tyrS tyrosyl-tRNA synthetase (Rhodosporidium toruloides IFO0880)
MADAPQGTLPVPPATAAKLTPAEKFQLITQNLGEVLGAEQLKALLEERDLVAYWGTAPTG
RPHLGYFVPLAKIADFLTANVEVKVLLADVHAFLDNLKAPIELVEARVDYYRRLIIAVFR
SLNLPLDRLKFVVGSSYQYTANYNLDKYKMSAITTEHDARKAGAEVVKQVSSPLLSGLLY
PLLQALDEEYLGVDFQFGGVDQRKIFTYAEAYLPKIGYKKRSHLMNLMVPGLSGGKMSSS
DPNSKIDFLDSPSAVKSKIQKAHCAPGEVEGNGVLAFIRHVVVPIGELFKGQGRADARPW
VEGDAPADAVFTIKGDPKFGGSVRHFRTVDELDDAYAKGEVHPGDLKSATVQAINALLAP
IQAEFNGSQEFQEAEKRAYPVEVKQVPAKKKVKKYTPKPEHLKTPEEKARDAEKAGLDET
AQLREAVVETLSA